Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21778 | 3' | -51.7 | NC_004813.1 | + | 49798 | 0.66 | 0.918112 |
Target: 5'- gCUGCGuGAgcagUACGGGGUcggACCGguaugCAGCg -3' miRNA: 3'- -GGCGC-CU----AUGUCUCG---UGGCaaa--GUCG- -5' |
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21778 | 3' | -51.7 | NC_004813.1 | + | 35200 | 0.66 | 0.911763 |
Target: 5'- aUGCGGAUAUccguggcaGGAGCAgCCGgg--AGCg -3' miRNA: 3'- gGCGCCUAUG--------UCUCGU-GGCaaagUCG- -5' |
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21778 | 3' | -51.7 | NC_004813.1 | + | 45368 | 0.66 | 0.911763 |
Target: 5'- aUCGUGGAUaACGGuGC-CCGcUUUgAGCc -3' miRNA: 3'- -GGCGCCUA-UGUCuCGuGGC-AAAgUCG- -5' |
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21778 | 3' | -51.7 | NC_004813.1 | + | 45502 | 0.66 | 0.911763 |
Target: 5'- gCCGCGGGUGgugaAGGGCgugCGcUUCAGUc -3' miRNA: 3'- -GGCGCCUAUg---UCUCGug-GCaAAGUCG- -5' |
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21778 | 3' | -51.7 | NC_004813.1 | + | 14298 | 0.66 | 0.905133 |
Target: 5'- aCGCGGAU----AGCAUCGUg-CGGCa -3' miRNA: 3'- gGCGCCUAugucUCGUGGCAaaGUCG- -5' |
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21778 | 3' | -51.7 | NC_004813.1 | + | 2655 | 0.66 | 0.898225 |
Target: 5'- uCUGCGcGAgcUACAgGAGCGCCGcaa-GGCu -3' miRNA: 3'- -GGCGC-CU--AUGU-CUCGUGGCaaagUCG- -5' |
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21778 | 3' | -51.7 | NC_004813.1 | + | 33159 | 0.67 | 0.875876 |
Target: 5'- gCCGCcccuGGccgGCGGugauGCACUGUaucUUCAGCa -3' miRNA: 3'- -GGCG----CCua-UGUCu---CGUGGCA---AAGUCG- -5' |
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21778 | 3' | -51.7 | NC_004813.1 | + | 32952 | 0.67 | 0.851207 |
Target: 5'- gCCG-GGAcACGGAaCACCGaacagacaaUUUCAGCg -3' miRNA: 3'- -GGCgCCUaUGUCUcGUGGC---------AAAGUCG- -5' |
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21778 | 3' | -51.7 | NC_004813.1 | + | 29123 | 0.68 | 0.842503 |
Target: 5'- gUGCGGAUuucugggagcaGCAGGGCAggCGcgUCAGCc -3' miRNA: 3'- gGCGCCUA-----------UGUCUCGUg-GCaaAGUCG- -5' |
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21778 | 3' | -51.7 | NC_004813.1 | + | 41855 | 0.68 | 0.842503 |
Target: 5'- aCCG-GGAaACAGcGCACCGUccgucucggUCGGUg -3' miRNA: 3'- -GGCgCCUaUGUCuCGUGGCAa--------AGUCG- -5' |
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21778 | 3' | -51.7 | NC_004813.1 | + | 46162 | 0.68 | 0.842503 |
Target: 5'- aCGCuGGAggacCAGAGCGCCaccauaCAGCa -3' miRNA: 3'- gGCG-CCUau--GUCUCGUGGcaaa--GUCG- -5' |
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21778 | 3' | -51.7 | NC_004813.1 | + | 34382 | 0.68 | 0.833572 |
Target: 5'- cCUGCGGAgccgGCAGGGCacucACCGcauccagaaCAGCc -3' miRNA: 3'- -GGCGCCUa---UGUCUCG----UGGCaaa------GUCG- -5' |
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21778 | 3' | -51.7 | NC_004813.1 | + | 29990 | 0.69 | 0.775783 |
Target: 5'- -gGCGGAguuugGCAGuGCGcucCCGUUUCucuGGCa -3' miRNA: 3'- ggCGCCUa----UGUCuCGU---GGCAAAG---UCG- -5' |
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21778 | 3' | -51.7 | NC_004813.1 | + | 22384 | 0.69 | 0.775783 |
Target: 5'- gCCaGUGGcgGCAGGGCAgaaGUggUCAGCg -3' miRNA: 3'- -GG-CGCCuaUGUCUCGUgg-CAa-AGUCG- -5' |
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21778 | 3' | -51.7 | NC_004813.1 | + | 32605 | 0.69 | 0.765553 |
Target: 5'- gUCGUGGAUcacuucccggGCAG-GCACCGUcaccgccUCAGUg -3' miRNA: 3'- -GGCGCCUA----------UGUCuCGUGGCAa------AGUCG- -5' |
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21778 | 3' | -51.7 | NC_004813.1 | + | 41055 | 0.69 | 0.752045 |
Target: 5'- aCGCGGGacCAGAuGCAgCGUUuuuaucucagccacUCAGCa -3' miRNA: 3'- gGCGCCUauGUCU-CGUgGCAA--------------AGUCG- -5' |
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21778 | 3' | -51.7 | NC_004813.1 | + | 46529 | 0.7 | 0.734065 |
Target: 5'- aCGCGGAUaucaGCGGAGCaauuACCGcgaauacCGGCa -3' miRNA: 3'- gGCGCCUA----UGUCUCG----UGGCaaa----GUCG- -5' |
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21778 | 3' | -51.7 | NC_004813.1 | + | 31698 | 0.7 | 0.734065 |
Target: 5'- gCGUGGccauccGUGCGGAGCGCUGgaUCAacugGCg -3' miRNA: 3'- gGCGCC------UAUGUCUCGUGGCaaAGU----CG- -5' |
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21778 | 3' | -51.7 | NC_004813.1 | + | 38885 | 0.7 | 0.709268 |
Target: 5'- cCCGCGGGcugccgccacggccUGCuGAGCACgGUacaCGGCu -3' miRNA: 3'- -GGCGCCU--------------AUGuCUCGUGgCAaa-GUCG- -5' |
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21778 | 3' | -51.7 | NC_004813.1 | + | 56418 | 0.7 | 0.701633 |
Target: 5'- gUGCGGGUugAGuguGUACCGUUacgcUgAGCa -3' miRNA: 3'- gGCGCCUAugUCu--CGUGGCAA----AgUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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