miRNA display CGI


Results 1 - 20 of 43 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21922 3' -50.5 NC_004913.1 + 51276 0.66 0.949932
Target:  5'- uCCACCcccugaagGACGGCGUUuuaCGGC-GCACc -3'
miRNA:   3'- -GGUGG--------UUGUUGUAAug-GCCGuCGUGc -5'
21922 3' -50.5 NC_004913.1 + 10199 0.66 0.944707
Target:  5'- cCCGCCAAUAuuuucccACGUc-CCGuCAGCACGc -3'
miRNA:   3'- -GGUGGUUGU-------UGUAauGGCcGUCGUGC- -5'
21922 3' -50.5 NC_004913.1 + 55965 0.66 0.940176
Target:  5'- aCCugCGGCAAuCAgcGCCagaacGGCAGC-CGa -3'
miRNA:   3'- -GGugGUUGUU-GUaaUGG-----CCGUCGuGC- -5'
21922 3' -50.5 NC_004913.1 + 30694 0.66 0.939658
Target:  5'- aUCAUCGACAACGccGCUGaaaucgaagaauuGCAGCGCa -3'
miRNA:   3'- -GGUGGUUGUUGUaaUGGC-------------CGUCGUGc -5'
21922 3' -50.5 NC_004913.1 + 21481 0.66 0.934868
Target:  5'- gCgACCAGCGGCGUUuuCCGGU-GC-CGg -3'
miRNA:   3'- -GgUGGUUGUUGUAAu-GGCCGuCGuGC- -5'
21922 3' -50.5 NC_004913.1 + 6045 0.66 0.934868
Target:  5'- -aACCGuCAGCAUUAaguCCGGUgAGCAUGc -3'
miRNA:   3'- ggUGGUuGUUGUAAU---GGCCG-UCGUGC- -5'
21922 3' -50.5 NC_004913.1 + 55458 0.66 0.929271
Target:  5'- gCACCGGCAGCuccggaGCCGGaaGGCAUc -3'
miRNA:   3'- gGUGGUUGUUGuaa---UGGCCg-UCGUGc -5'
21922 3' -50.5 NC_004913.1 + 2787 0.67 0.923384
Target:  5'- -aGCCAGCAACAgucuucccaccUGCUGGCAGgCAa- -3'
miRNA:   3'- ggUGGUUGUUGUa----------AUGGCCGUC-GUgc -5'
21922 3' -50.5 NC_004913.1 + 11137 0.67 0.923384
Target:  5'- gCGCCGACGACAgcuccugucugUACUGuucaGCAGgGCGg -3'
miRNA:   3'- gGUGGUUGUUGUa----------AUGGC----CGUCgUGC- -5'
21922 3' -50.5 NC_004913.1 + 31430 0.67 0.923384
Target:  5'- aCCGCCAGCuACua-ACUGGCGGUu-- -3'
miRNA:   3'- -GGUGGUUGuUGuaaUGGCCGUCGugc -5'
21922 3' -50.5 NC_004913.1 + 19613 0.67 0.917207
Target:  5'- gUACCuGAUAugGUUGCUGGCGGUGUGg -3'
miRNA:   3'- gGUGG-UUGUugUAAUGGCCGUCGUGC- -5'
21922 3' -50.5 NC_004913.1 + 6914 0.67 0.910741
Target:  5'- aCACCAACGACug-GCggcugaaugccaCGGCAGC-Ca -3'
miRNA:   3'- gGUGGUUGUUGuaaUG------------GCCGUCGuGc -5'
21922 3' -50.5 NC_004913.1 + 58059 0.67 0.910741
Target:  5'- -aGCCAAa---AUUugUGGCGGCACa -3'
miRNA:   3'- ggUGGUUguugUAAugGCCGUCGUGc -5'
21922 3' -50.5 NC_004913.1 + 55045 0.67 0.903989
Target:  5'- aCCGCCAGCGucCAUUccugucGCUGGCGGUu-- -3'
miRNA:   3'- -GGUGGUUGUu-GUAA------UGGCCGUCGugc -5'
21922 3' -50.5 NC_004913.1 + 19428 0.67 0.902604
Target:  5'- gCCACCGGCAaaaauauccugcACAguugcgacacCCGGCAGCcccauACGg -3'
miRNA:   3'- -GGUGGUUGU------------UGUaau-------GGCCGUCG-----UGC- -5'
21922 3' -50.5 NC_004913.1 + 20600 0.67 0.896953
Target:  5'- uUCAuUCAACAACug-GCUGGCAGCuuccCGg -3'
miRNA:   3'- -GGU-GGUUGUUGuaaUGGCCGUCGu---GC- -5'
21922 3' -50.5 NC_004913.1 + 54825 0.68 0.889636
Target:  5'- gUCACCGGuCAguGCAUUugCGGCGGauaaACu -3'
miRNA:   3'- -GGUGGUU-GU--UGUAAugGCCGUCg---UGc -5'
21922 3' -50.5 NC_004913.1 + 2882 0.68 0.889636
Target:  5'- gCGCCuguuCAGCAgacACCGGCguuuaaGGCACa -3'
miRNA:   3'- gGUGGuu--GUUGUaa-UGGCCG------UCGUGc -5'
21922 3' -50.5 NC_004913.1 + 20690 0.68 0.882045
Target:  5'- uUCGCCcACAACAggaagugacGCCGGaAGCACa -3'
miRNA:   3'- -GGUGGuUGUUGUaa-------UGGCCgUCGUGc -5'
21922 3' -50.5 NC_004913.1 + 59305 0.68 0.874185
Target:  5'- aUCuCUGGCGGCGUUGauucuuucCCGGuCAGCACGa -3'
miRNA:   3'- -GGuGGUUGUUGUAAU--------GGCC-GUCGUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.