miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22232 3' -56.7 NC_005045.1 + 23744 0.66 0.546052
Target:  5'- uGAUGAcGU-GCugAGCCUGggccggACCCAGg -3'
miRNA:   3'- -CUACU-CGuCGugUCGGGCa-----UGGGUCg -5'
22232 3' -56.7 NC_005045.1 + 29490 0.66 0.546052
Target:  5'- -cUGAGCcuGCACAGCCU-UGgCCAGg -3'
miRNA:   3'- cuACUCGu-CGUGUCGGGcAUgGGUCg -5'
22232 3' -56.7 NC_005045.1 + 5057 0.66 0.546052
Target:  5'- --aGGGCgAGUAaGGCCCGcacguaauagGCCCGGCc -3'
miRNA:   3'- cuaCUCG-UCGUgUCGGGCa---------UGGGUCG- -5'
22232 3' -56.7 NC_005045.1 + 30633 0.66 0.539489
Target:  5'- --aGGGCuuCGCGGCCCGUgucgcuggugagcagACCC-GCa -3'
miRNA:   3'- cuaCUCGucGUGUCGGGCA---------------UGGGuCG- -5'
22232 3' -56.7 NC_005045.1 + 13591 0.66 0.524282
Target:  5'- cAUGAuGUcGCGCAGCCCuuguugACCuCGGCg -3'
miRNA:   3'- cUACU-CGuCGUGUCGGGca----UGG-GUCG- -5'
22232 3' -56.7 NC_005045.1 + 35953 0.66 0.524282
Target:  5'- aAUGA--GGCGCuGCgCCGUGCCCugGGCu -3'
miRNA:   3'- cUACUcgUCGUGuCG-GGCAUGGG--UCG- -5'
22232 3' -56.7 NC_005045.1 + 34083 0.66 0.524282
Target:  5'- aGAUcGAGCAGaaGCAGUCCG-ACCagGGCa -3'
miRNA:   3'- -CUA-CUCGUCg-UGUCGGGCaUGGg-UCG- -5'
22232 3' -56.7 NC_005045.1 + 18062 0.66 0.522123
Target:  5'- --gGGGCGGCGCAgaacgacGCCCGcauUGCCUuggagaaGGCg -3'
miRNA:   3'- cuaCUCGUCGUGU-------CGGGC---AUGGG-------UCG- -5'
22232 3' -56.7 NC_005045.1 + 32229 0.66 0.521045
Target:  5'- ----uGCGGCAucCAGCCCaGcaacauacccgacuUGCCCAGCg -3'
miRNA:   3'- cuacuCGUCGU--GUCGGG-C--------------AUGGGUCG- -5'
22232 3' -56.7 NC_005045.1 + 5153 0.66 0.513522
Target:  5'- --cGAGCAcaucaACGGCaCCGUGCgUAGCg -3'
miRNA:   3'- cuaCUCGUcg---UGUCG-GGCAUGgGUCG- -5'
22232 3' -56.7 NC_005045.1 + 29052 0.66 0.513522
Target:  5'- cGGUGAGCGu----GCCCGUAUggCCGGCg -3'
miRNA:   3'- -CUACUCGUcguguCGGGCAUG--GGUCG- -5'
22232 3' -56.7 NC_005045.1 + 2826 0.66 0.502852
Target:  5'- uGAUGAGUccagcgaugGGUGCAGCCUugGCggCCAGCg -3'
miRNA:   3'- -CUACUCG---------UCGUGUCGGGcaUG--GGUCG- -5'
22232 3' -56.7 NC_005045.1 + 41377 0.66 0.502852
Target:  5'- --cGAGCAGUACcucgcuGgCCGUAacaCCGGCc -3'
miRNA:   3'- cuaCUCGUCGUGu-----CgGGCAUg--GGUCG- -5'
22232 3' -56.7 NC_005045.1 + 23245 0.67 0.48808
Target:  5'- cGGUGAuccaGCAGCAggcuccggucCAGCCCGgucaggugggugcGCCgCAGCa -3'
miRNA:   3'- -CUACU----CGUCGU----------GUCGGGCa------------UGG-GUCG- -5'
22232 3' -56.7 NC_005045.1 + 18212 0.67 0.480771
Target:  5'- cGAUGGGUAGCAuccgcauCAGCaugaugCGUGCCCuggggauGCg -3'
miRNA:   3'- -CUACUCGUCGU-------GUCGg-----GCAUGGGu------CG- -5'
22232 3' -56.7 NC_005045.1 + 13834 0.67 0.461208
Target:  5'- ---cGGCAGCGCGGCagcacugGUGgCCAGCa -3'
miRNA:   3'- cuacUCGUCGUGUCGgg-----CAUgGGUCG- -5'
22232 3' -56.7 NC_005045.1 + 10390 0.67 0.455117
Target:  5'- cGAUGAGCGccGCGCcauGGUCCGcagccucauggaagaUugCCGGCg -3'
miRNA:   3'- -CUACUCGU--CGUG---UCGGGC---------------AugGGUCG- -5'
22232 3' -56.7 NC_005045.1 + 41052 0.67 0.451081
Target:  5'- ---aAGCGGCagACGGCCCGUGCggaGGCc -3'
miRNA:   3'- cuacUCGUCG--UGUCGGGCAUGgg-UCG- -5'
22232 3' -56.7 NC_005045.1 + 41588 0.68 0.421457
Target:  5'- --gGGGUAGCGCcGCCCucgccGCCCAGg -3'
miRNA:   3'- cuaCUCGUCGUGuCGGGca---UGGGUCg -5'
22232 3' -56.7 NC_005045.1 + 3174 0.68 0.42049
Target:  5'- aGAUGGGaCGgccauucGCACAGCCUuugcgGUAUUCAGCg -3'
miRNA:   3'- -CUACUC-GU-------CGUGUCGGG-----CAUGGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.