Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22250 | 3' | -57.3 | NC_005045.1 | + | 8600 | 0.68 | 0.397166 |
Target: 5'- uGCCGGCguacaugaaggGC-CUCCA-CGCCGGGGc- -3' miRNA: 3'- cCGGCCG-----------UGuGAGGUaGCGGCUCUuu -5' |
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22250 | 3' | -57.3 | NC_005045.1 | + | 5836 | 0.66 | 0.527796 |
Target: 5'- cGUCGGCGCGCUUCG-CGUCGGc--- -3' miRNA: 3'- cCGGCCGUGUGAGGUaGCGGCUcuuu -5' |
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22250 | 3' | -57.3 | NC_005045.1 | + | 5297 | 0.73 | 0.179549 |
Target: 5'- cGCCGaGCGCGCa-CGUCGCUGGGAGAu -3' miRNA: 3'- cCGGC-CGUGUGagGUAGCGGCUCUUU- -5' |
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22250 | 3' | -57.3 | NC_005045.1 | + | 5014 | 0.69 | 0.3278 |
Target: 5'- uGGCCGGUGCGCU--GUCGCUGAa--- -3' miRNA: 3'- -CCGGCCGUGUGAggUAGCGGCUcuuu -5' |
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22250 | 3' | -57.3 | NC_005045.1 | + | 4822 | 0.66 | 0.485585 |
Target: 5'- cGCCGaGCGcCugUCCAgccucgUCGCCG-GAGAc -3' miRNA: 3'- cCGGC-CGU-GugAGGU------AGCGGCuCUUU- -5' |
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22250 | 3' | -57.3 | NC_005045.1 | + | 4638 | 0.69 | 0.34427 |
Target: 5'- aGGCUGGCGCACcagCCuUCGCCuuGGu- -3' miRNA: 3'- -CCGGCCGUGUGa--GGuAGCGGcuCUuu -5' |
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22250 | 3' | -57.3 | NC_005045.1 | + | 4513 | 0.66 | 0.485585 |
Target: 5'- cGGgUGGCGCAUggUCC-UCGCCGAcaaGggGa -3' miRNA: 3'- -CCgGCCGUGUG--AGGuAGCGGCU---CuuU- -5' |
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22250 | 3' | -57.3 | NC_005045.1 | + | 3733 | 0.66 | 0.506503 |
Target: 5'- aGGCCgGGCAgauaGCgaCCAcgcCGCCGAGGAAc -3' miRNA: 3'- -CCGG-CCGUg---UGa-GGUa--GCGGCUCUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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