miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22267 5' -56 NC_005045.1 + 26683 0.66 0.599613
Target:  5'- cGgACCUGCcGGcCUUGCugCCgggaGUCGGUg -3'
miRNA:   3'- -CgUGGACGaCC-GAGUGugGG----UAGUCG- -5'
22267 5' -56 NC_005045.1 + 11610 0.66 0.588417
Target:  5'- -gGCCUGCUGGg-UACACCagaccCGGCc -3'
miRNA:   3'- cgUGGACGACCgaGUGUGGgua--GUCG- -5'
22267 5' -56 NC_005045.1 + 33604 0.66 0.57726
Target:  5'- cGCACgUGCcgucaGGCcaACGCCCugcUCAGCc -3'
miRNA:   3'- -CGUGgACGa----CCGagUGUGGGu--AGUCG- -5'
22267 5' -56 NC_005045.1 + 10945 0.66 0.566149
Target:  5'- cGCuGCCUGCUGGCagAUAUCCAc---- -3'
miRNA:   3'- -CG-UGGACGACCGagUGUGGGUagucg -5'
22267 5' -56 NC_005045.1 + 41662 0.66 0.566149
Target:  5'- cGCACCggcggGCUGaGCUUcaGCCCGUCc-- -3'
miRNA:   3'- -CGUGGa----CGAC-CGAGugUGGGUAGucg -5'
22267 5' -56 NC_005045.1 + 24868 0.66 0.566149
Target:  5'- cGCACCgguUGcCUGGUacUCgACGuuCAUCAGCu -3'
miRNA:   3'- -CGUGG---AC-GACCG--AG-UGUggGUAGUCG- -5'
22267 5' -56 NC_005045.1 + 18780 0.67 0.533187
Target:  5'- aGCACCaugUGCUGGUacgcCGCACCa---AGCa -3'
miRNA:   3'- -CGUGG---ACGACCGa---GUGUGGguagUCG- -5'
22267 5' -56 NC_005045.1 + 11605 0.67 0.533187
Target:  5'- gGCACUcgacgaGCUGGCUCcgaaguacggcgGCACCCAcaagguggaCGGCa -3'
miRNA:   3'- -CGUGGa-----CGACCGAG------------UGUGGGUa--------GUCG- -5'
22267 5' -56 NC_005045.1 + 24703 0.67 0.533187
Target:  5'- gGCAgCUUGCuUGGCggUCAgGCCgGUCAGg -3'
miRNA:   3'- -CGU-GGACG-ACCG--AGUgUGGgUAGUCg -5'
22267 5' -56 NC_005045.1 + 566 0.67 0.522347
Target:  5'- uCGCCUcCUGGCUC-UACCUGUC-GCu -3'
miRNA:   3'- cGUGGAcGACCGAGuGUGGGUAGuCG- -5'
22267 5' -56 NC_005045.1 + 16610 0.67 0.515886
Target:  5'- aGCA-CUGCcGGCUCAC-CUCAccgaagcgggauugcUCGGCa -3'
miRNA:   3'- -CGUgGACGaCCGAGUGuGGGU---------------AGUCG- -5'
22267 5' -56 NC_005045.1 + 32133 0.67 0.500935
Target:  5'- gGCugCUGCUGGCggCGCuggGCaaGUCGGg -3'
miRNA:   3'- -CGugGACGACCGa-GUG---UGggUAGUCg -5'
22267 5' -56 NC_005045.1 + 34494 0.67 0.499874
Target:  5'- -aGCUUGCUGaGCUgGCcacgaugGCCCAcCGGCa -3'
miRNA:   3'- cgUGGACGAC-CGAgUG-------UGGGUaGUCG- -5'
22267 5' -56 NC_005045.1 + 25586 0.67 0.490374
Target:  5'- uCACCggUGUUGGCaucUCGCACCCccaGGCc -3'
miRNA:   3'- cGUGG--ACGACCG---AGUGUGGGuagUCG- -5'
22267 5' -56 NC_005045.1 + 20540 0.67 0.489324
Target:  5'- uGCACUUGCuccuaugUGGgUgACAuaauCCUAUCAGCa -3'
miRNA:   3'- -CGUGGACG-------ACCgAgUGU----GGGUAGUCG- -5'
22267 5' -56 NC_005045.1 + 28710 0.68 0.479918
Target:  5'- -gGCCUGCUGGgUCAgAagaguaCCA-CGGCg -3'
miRNA:   3'- cgUGGACGACCgAGUgUg-----GGUaGUCG- -5'
22267 5' -56 NC_005045.1 + 22577 0.68 0.479918
Target:  5'- cGCGCCacCUGGCacgUAuCGCCCAucUCGGCg -3'
miRNA:   3'- -CGUGGacGACCGa--GU-GUGGGU--AGUCG- -5'
22267 5' -56 NC_005045.1 + 23102 0.68 0.478878
Target:  5'- cGCgGCCUGCUGacgcugcuGCUC-CGCCUcugccuguagcucGUCGGCg -3'
miRNA:   3'- -CG-UGGACGAC--------CGAGuGUGGG-------------UAGUCG- -5'
22267 5' -56 NC_005045.1 + 39202 0.68 0.449229
Target:  5'- gGCGCgUuauggcGaCUGGCUCGCACCCucuAUCcuGGCg -3'
miRNA:   3'- -CGUGgA------C-GACCGAGUGUGGG---UAG--UCG- -5'
22267 5' -56 NC_005045.1 + 34077 0.68 0.433311
Target:  5'- aGCGCCUGCcGGaUgaaugccguguccgcUACACCCAUCGcGCc -3'
miRNA:   3'- -CGUGGACGaCCgA---------------GUGUGGGUAGU-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.