Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22267 | 5' | -56 | NC_005045.1 | + | 26683 | 0.66 | 0.599613 |
Target: 5'- cGgACCUGCcGGcCUUGCugCCgggaGUCGGUg -3' miRNA: 3'- -CgUGGACGaCC-GAGUGugGG----UAGUCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 11610 | 0.66 | 0.588417 |
Target: 5'- -gGCCUGCUGGg-UACACCagaccCGGCc -3' miRNA: 3'- cgUGGACGACCgaGUGUGGgua--GUCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 33604 | 0.66 | 0.57726 |
Target: 5'- cGCACgUGCcgucaGGCcaACGCCCugcUCAGCc -3' miRNA: 3'- -CGUGgACGa----CCGagUGUGGGu--AGUCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 41662 | 0.66 | 0.566149 |
Target: 5'- cGCACCggcggGCUGaGCUUcaGCCCGUCc-- -3' miRNA: 3'- -CGUGGa----CGAC-CGAGugUGGGUAGucg -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 24868 | 0.66 | 0.566149 |
Target: 5'- cGCACCgguUGcCUGGUacUCgACGuuCAUCAGCu -3' miRNA: 3'- -CGUGG---AC-GACCG--AG-UGUggGUAGUCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 10945 | 0.66 | 0.566149 |
Target: 5'- cGCuGCCUGCUGGCagAUAUCCAc---- -3' miRNA: 3'- -CG-UGGACGACCGagUGUGGGUagucg -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 24703 | 0.67 | 0.533187 |
Target: 5'- gGCAgCUUGCuUGGCggUCAgGCCgGUCAGg -3' miRNA: 3'- -CGU-GGACG-ACCG--AGUgUGGgUAGUCg -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 18780 | 0.67 | 0.533187 |
Target: 5'- aGCACCaugUGCUGGUacgcCGCACCa---AGCa -3' miRNA: 3'- -CGUGG---ACGACCGa---GUGUGGguagUCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 11605 | 0.67 | 0.533187 |
Target: 5'- gGCACUcgacgaGCUGGCUCcgaaguacggcgGCACCCAcaagguggaCGGCa -3' miRNA: 3'- -CGUGGa-----CGACCGAG------------UGUGGGUa--------GUCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 566 | 0.67 | 0.522347 |
Target: 5'- uCGCCUcCUGGCUC-UACCUGUC-GCu -3' miRNA: 3'- cGUGGAcGACCGAGuGUGGGUAGuCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 16610 | 0.67 | 0.515886 |
Target: 5'- aGCA-CUGCcGGCUCAC-CUCAccgaagcgggauugcUCGGCa -3' miRNA: 3'- -CGUgGACGaCCGAGUGuGGGU---------------AGUCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 32133 | 0.67 | 0.500935 |
Target: 5'- gGCugCUGCUGGCggCGCuggGCaaGUCGGg -3' miRNA: 3'- -CGugGACGACCGa-GUG---UGggUAGUCg -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 34494 | 0.67 | 0.499874 |
Target: 5'- -aGCUUGCUGaGCUgGCcacgaugGCCCAcCGGCa -3' miRNA: 3'- cgUGGACGAC-CGAgUG-------UGGGUaGUCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 25586 | 0.67 | 0.490374 |
Target: 5'- uCACCggUGUUGGCaucUCGCACCCccaGGCc -3' miRNA: 3'- cGUGG--ACGACCG---AGUGUGGGuagUCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 20540 | 0.67 | 0.489324 |
Target: 5'- uGCACUUGCuccuaugUGGgUgACAuaauCCUAUCAGCa -3' miRNA: 3'- -CGUGGACG-------ACCgAgUGU----GGGUAGUCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 28710 | 0.68 | 0.479918 |
Target: 5'- -gGCCUGCUGGgUCAgAagaguaCCA-CGGCg -3' miRNA: 3'- cgUGGACGACCgAGUgUg-----GGUaGUCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 22577 | 0.68 | 0.479918 |
Target: 5'- cGCGCCacCUGGCacgUAuCGCCCAucUCGGCg -3' miRNA: 3'- -CGUGGacGACCGa--GU-GUGGGU--AGUCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 23102 | 0.68 | 0.478878 |
Target: 5'- cGCgGCCUGCUGacgcugcuGCUC-CGCCUcugccuguagcucGUCGGCg -3' miRNA: 3'- -CG-UGGACGAC--------CGAGuGUGGG-------------UAGUCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 39202 | 0.68 | 0.449229 |
Target: 5'- gGCGCgUuauggcGaCUGGCUCGCACCCucuAUCcuGGCg -3' miRNA: 3'- -CGUGgA------C-GACCGAGUGUGGG---UAG--UCG- -5' |
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22267 | 5' | -56 | NC_005045.1 | + | 34077 | 0.68 | 0.433311 |
Target: 5'- aGCGCCUGCcGGaUgaaugccguguccgcUACACCCAUCGcGCc -3' miRNA: 3'- -CGUGGACGaCCgA---------------GUGUGGGUAGU-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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