Results 1 - 20 of 53 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22276 | 3' | -54 | NC_005045.1 | + | 41428 | 0.71 | 0.38013 |
Target: 5'- cCAGCCCGGCAccgacaaccGCAUcGCCCuacacgacaugGACgagGCCg -3' miRNA: 3'- -GUCGGGUCGU---------UGUA-UGGG-----------CUGaa-CGG- -5' |
|||||||
22276 | 3' | -54 | NC_005045.1 | + | 41218 | 0.67 | 0.634191 |
Target: 5'- aCAGCCUGuGCAACcgcCCCGGCgcccgcugUGCUg -3' miRNA: 3'- -GUCGGGU-CGUUGuauGGGCUGa-------ACGG- -5' |
|||||||
22276 | 3' | -54 | NC_005045.1 | + | 41070 | 0.69 | 0.521842 |
Target: 5'- aGGCCCGGUAGCu--CUgGACgaaGCCg -3' miRNA: 3'- gUCGGGUCGUUGuauGGgCUGaa-CGG- -5' |
|||||||
22276 | 3' | -54 | NC_005045.1 | + | 40526 | 0.69 | 0.532811 |
Target: 5'- gCAGCCCuGGCGGC-UGCCCucgccGGcCUUGUCg -3' miRNA: 3'- -GUCGGG-UCGUUGuAUGGG-----CU-GAACGG- -5' |
|||||||
22276 | 3' | -54 | NC_005045.1 | + | 40332 | 0.75 | 0.233197 |
Target: 5'- gCGGCCCuuGCGACGcuCCCGGCccaUGCCg -3' miRNA: 3'- -GUCGGGu-CGUUGUauGGGCUGa--ACGG- -5' |
|||||||
22276 | 3' | -54 | NC_005045.1 | + | 39358 | 0.69 | 0.510962 |
Target: 5'- -cGCCCAGCcACggGUGCCguCGAggccCUUGCCg -3' miRNA: 3'- guCGGGUCGuUG--UAUGG--GCU----GAACGG- -5' |
|||||||
22276 | 3' | -54 | NC_005045.1 | + | 37616 | 0.68 | 0.588718 |
Target: 5'- aAGUUCGGUGACuaccGUACCCGugU-GCCc -3' miRNA: 3'- gUCGGGUCGUUG----UAUGGGCugAaCGG- -5' |
|||||||
22276 | 3' | -54 | NC_005045.1 | + | 35957 | 0.66 | 0.713233 |
Target: 5'- aGGCgCuGCGcCGUGCCCugGGCUUcGCCg -3' miRNA: 3'- gUCGgGuCGUuGUAUGGG--CUGAA-CGG- -5' |
|||||||
22276 | 3' | -54 | NC_005045.1 | + | 35352 | 0.66 | 0.713233 |
Target: 5'- gAGgCCGGCAGUGUAgCCGA--UGCCg -3' miRNA: 3'- gUCgGGUCGUUGUAUgGGCUgaACGG- -5' |
|||||||
22276 | 3' | -54 | NC_005045.1 | + | 34332 | 0.66 | 0.679626 |
Target: 5'- gAGUCCccCGGCAUACCUGcGCggGCCa -3' miRNA: 3'- gUCGGGucGUUGUAUGGGC-UGaaCGG- -5' |
|||||||
22276 | 3' | -54 | NC_005045.1 | + | 34190 | 0.71 | 0.408331 |
Target: 5'- -uGUCCAGCGACAgucgGCCC---UUGCCg -3' miRNA: 3'- guCGGGUCGUUGUa---UGGGcugAACGG- -5' |
|||||||
22276 | 3' | -54 | NC_005045.1 | + | 33650 | 0.66 | 0.713233 |
Target: 5'- -uGCCUacGGUAGCGUccgcguagACCCGAaccUGCCg -3' miRNA: 3'- guCGGG--UCGUUGUA--------UGGGCUga-ACGG- -5' |
|||||||
22276 | 3' | -54 | NC_005045.1 | + | 33031 | 0.66 | 0.713233 |
Target: 5'- cCGGCC-AGCAGCGUcuccucgaACUCGGacagUUGCCg -3' miRNA: 3'- -GUCGGgUCGUUGUA--------UGGGCUg---AACGG- -5' |
|||||||
22276 | 3' | -54 | NC_005045.1 | + | 32625 | 0.66 | 0.702099 |
Target: 5'- gGGCCUggGGCAGCGUACcgcguuCCGugUggUGCa -3' miRNA: 3'- gUCGGG--UCGUUGUAUG------GGCugA--ACGg -5' |
|||||||
22276 | 3' | -54 | NC_005045.1 | + | 32221 | 1.11 | 0.000633 |
Target: 5'- cCAGCCCAGCAACAUACCCGACUUGCCc -3' miRNA: 3'- -GUCGGGUCGUUGUAUGGGCUGAACGG- -5' |
|||||||
22276 | 3' | -54 | NC_005045.1 | + | 30553 | 0.7 | 0.437803 |
Target: 5'- -cGCCCGGCgGACAUGCUCaGAacgGCCu -3' miRNA: 3'- guCGGGUCG-UUGUAUGGG-CUgaaCGG- -5' |
|||||||
22276 | 3' | -54 | NC_005045.1 | + | 29874 | 0.66 | 0.713233 |
Target: 5'- -cGCuCCAGCGGCccuCCuCGACcaUGCCa -3' miRNA: 3'- guCG-GGUCGUUGuauGG-GCUGa-ACGG- -5' |
|||||||
22276 | 3' | -54 | NC_005045.1 | + | 28260 | 0.66 | 0.702099 |
Target: 5'- aCAGCUCAGCucgaacuugGACGUgGCCauauCGACccgUGCCg -3' miRNA: 3'- -GUCGGGUCG---------UUGUA-UGG----GCUGa--ACGG- -5' |
|||||||
22276 | 3' | -54 | NC_005045.1 | + | 27793 | 0.69 | 0.521842 |
Target: 5'- cCAGCucaCCAGCGACGgucGCCuCGAUacGCCg -3' miRNA: 3'- -GUCG---GGUCGUUGUa--UGG-GCUGaaCGG- -5' |
|||||||
22276 | 3' | -54 | NC_005045.1 | + | 25966 | 0.66 | 0.66831 |
Target: 5'- uGGCCCAccuGCuGCAUACC-GACcaGCCc -3' miRNA: 3'- gUCGGGU---CGuUGUAUGGgCUGaaCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home