Results 1 - 20 of 130 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22276 | 5' | -57.3 | NC_005045.1 | + | 7063 | 0.66 | 0.489349 |
Target: 5'- gCCAGCAGgAGagccggaCGUGCUgcacaugagGGCAccCGGCCa -3' miRNA: 3'- -GGUCGUCgUCg------GUACGG---------UCGU--GCUGG- -5' |
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22276 | 5' | -57.3 | NC_005045.1 | + | 32023 | 0.66 | 0.51031 |
Target: 5'- aUAGgAGguaGGCCGcguccuuggcauUGCCGGCACgGGCCa -3' miRNA: 3'- gGUCgUCg--UCGGU------------ACGGUCGUG-CUGG- -5' |
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22276 | 5' | -57.3 | NC_005045.1 | + | 32993 | 0.66 | 0.51031 |
Target: 5'- aCCGGCGGCgcGGUCuUGCUucagggcguugAGCACGuuACCc -3' miRNA: 3'- -GGUCGUCG--UCGGuACGG-----------UCGUGC--UGG- -5' |
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22276 | 5' | -57.3 | NC_005045.1 | + | 41935 | 0.66 | 0.499781 |
Target: 5'- cUCGaCAGCAGCCA--UCAGCucgucgagguguGCGACCa -3' miRNA: 3'- -GGUcGUCGUCGGUacGGUCG------------UGCUGG- -5' |
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22276 | 5' | -57.3 | NC_005045.1 | + | 9301 | 0.66 | 0.499781 |
Target: 5'- uUCGGCAG-GGaCAgGCCAcGCAUGACCu -3' miRNA: 3'- -GGUCGUCgUCgGUaCGGU-CGUGCUGG- -5' |
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22276 | 5' | -57.3 | NC_005045.1 | + | 12931 | 0.66 | 0.499781 |
Target: 5'- gCCAgGCGGUacaAGUgCAUGUCAGUGcCGGCCa -3' miRNA: 3'- -GGU-CGUCG---UCG-GUACGGUCGU-GCUGG- -5' |
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22276 | 5' | -57.3 | NC_005045.1 | + | 7017 | 0.66 | 0.499781 |
Target: 5'- gCCAGCucGGCGGcCCGUaCCAGUucaGCG-CCg -3' miRNA: 3'- -GGUCG--UCGUC-GGUAcGGUCG---UGCuGG- -5' |
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22276 | 5' | -57.3 | NC_005045.1 | + | 5856 | 0.66 | 0.51031 |
Target: 5'- -gAGCAGCAGCUuuucguacucGUCGGCGCGcuucgcgucgGCCu -3' miRNA: 3'- ggUCGUCGUCGGua--------CGGUCGUGC----------UGG- -5' |
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22276 | 5' | -57.3 | NC_005045.1 | + | 4276 | 0.66 | 0.489349 |
Target: 5'- cCCGGuCAGUAGgcCCcgGCCuacuGCACGuaguGCCa -3' miRNA: 3'- -GGUC-GUCGUC--GGuaCGGu---CGUGC----UGG- -5' |
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22276 | 5' | -57.3 | NC_005045.1 | + | 30551 | 0.66 | 0.531635 |
Target: 5'- cCCGGCGGa---CAUGCuCAGaACGGCCu -3' miRNA: 3'- -GGUCGUCgucgGUACG-GUCgUGCUGG- -5' |
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22276 | 5' | -57.3 | NC_005045.1 | + | 26808 | 0.66 | 0.51031 |
Target: 5'- -gAGcCGGUGGCCAUGaCAGCGcCGuCCa -3' miRNA: 3'- ggUC-GUCGUCGGUACgGUCGU-GCuGG- -5' |
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22276 | 5' | -57.3 | NC_005045.1 | + | 28367 | 0.66 | 0.489349 |
Target: 5'- gCCAGCGGCcaauagugguAGCCAgaaaGCCAuCAC-ACCc -3' miRNA: 3'- -GGUCGUCG----------UCGGUa---CGGUcGUGcUGG- -5' |
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22276 | 5' | -57.3 | NC_005045.1 | + | 7919 | 0.66 | 0.531635 |
Target: 5'- --uGCAGCAGaCC-UGCaAGCGCG-CCu -3' miRNA: 3'- gguCGUCGUC-GGuACGgUCGUGCuGG- -5' |
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22276 | 5' | -57.3 | NC_005045.1 | + | 2636 | 0.66 | 0.498733 |
Target: 5'- aCCAGgAGUuuaaccuGGCCGcUGCCcuGGCcACGAUCa -3' miRNA: 3'- -GGUCgUCG-------UCGGU-ACGG--UCG-UGCUGG- -5' |
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22276 | 5' | -57.3 | NC_005045.1 | + | 29468 | 0.66 | 0.489349 |
Target: 5'- cCCGGCAGCucAGCCuggaagagGCCGGCcUGuucuauACCa -3' miRNA: 3'- -GGUCGUCG--UCGGua------CGGUCGuGC------UGG- -5' |
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22276 | 5' | -57.3 | NC_005045.1 | + | 2703 | 0.66 | 0.485206 |
Target: 5'- -gGGCAGCGGCCAgguuaaacuccugGuCCAGCGCuuUCu -3' miRNA: 3'- ggUCGUCGUCGGUa------------C-GGUCGUGcuGG- -5' |
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22276 | 5' | -57.3 | NC_005045.1 | + | 5230 | 0.66 | 0.531635 |
Target: 5'- -aAGCuGCccuGGCCguGUGCCAGCAgCGGgCa -3' miRNA: 3'- ggUCGuCG---UCGG--UACGGUCGU-GCUgG- -5' |
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22276 | 5' | -57.3 | NC_005045.1 | + | 30815 | 0.66 | 0.489349 |
Target: 5'- gUCGGUAGUcGCCuu-CgAGUACGACCg -3' miRNA: 3'- -GGUCGUCGuCGGuacGgUCGUGCUGG- -5' |
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22276 | 5' | -57.3 | NC_005045.1 | + | 7962 | 0.66 | 0.520929 |
Target: 5'- cCCGGCAGguGuCCGUGgUAGUgagGCGugaugcGCCg -3' miRNA: 3'- -GGUCGUCguC-GGUACgGUCG---UGC------UGG- -5' |
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22276 | 5' | -57.3 | NC_005045.1 | + | 13713 | 0.66 | 0.499781 |
Target: 5'- aCCAGacCGGguGCC-UGCCgggAGUACG-CCg -3' miRNA: 3'- -GGUC--GUCguCGGuACGG---UCGUGCuGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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