miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22276 5' -57.3 NC_005045.1 + 32187 1.14 0.00018
Target:  5'- gCCAGCAGCAGCCAUGCCAGCACGACCg -3'
miRNA:   3'- -GGUCGUCGUCGGUACGGUCGUGCUGG- -5'
22276 5' -57.3 NC_005045.1 + 2275 0.82 0.047217
Target:  5'- gCAGCGGCGGCCAgguaGCCGGCACuGCg -3'
miRNA:   3'- gGUCGUCGUCGGUa---CGGUCGUGcUGg -5'
22276 5' -57.3 NC_005045.1 + 23134 0.81 0.053126
Target:  5'- uCCAGCAaggucuccugcGCGGCCuggGCCuGCGCGGCCu -3'
miRNA:   3'- -GGUCGU-----------CGUCGGua-CGGuCGUGCUGG- -5'
22276 5' -57.3 NC_005045.1 + 30843 0.8 0.056344
Target:  5'- aCCAGCGGCAGCCuccucGCCgucgAGUACGACg -3'
miRNA:   3'- -GGUCGUCGUCGGua---CGG----UCGUGCUGg -5'
22276 5' -57.3 NC_005045.1 + 681 0.79 0.073312
Target:  5'- aCCAGCGGCAGCaCAaGCaCAGCGCcagggagguaGACCa -3'
miRNA:   3'- -GGUCGUCGUCG-GUaCG-GUCGUG----------CUGG- -5'
22276 5' -57.3 NC_005045.1 + 4135 0.78 0.084761
Target:  5'- gCAGUAGCAGgCGccUGCCAGCA-GGCCg -3'
miRNA:   3'- gGUCGUCGUCgGU--ACGGUCGUgCUGG- -5'
22276 5' -57.3 NC_005045.1 + 16438 0.77 0.10075
Target:  5'- -uGGCGGCuGCC-UGCCGGCGCuuGGCCa -3'
miRNA:   3'- ggUCGUCGuCGGuACGGUCGUG--CUGG- -5'
22276 5' -57.3 NC_005045.1 + 33223 0.77 0.103678
Target:  5'- gCCAggacGCGGCucagGGCCGUGUCAGCAUcgGACCg -3'
miRNA:   3'- -GGU----CGUCG----UCGGUACGGUCGUG--CUGG- -5'
22276 5' -57.3 NC_005045.1 + 14831 0.76 0.12195
Target:  5'- gCCGGCAGU-GCCcaacgucgcggcggAUGCUGGCGCGACUg -3'
miRNA:   3'- -GGUCGUCGuCGG--------------UACGGUCGUGCUGG- -5'
22276 5' -57.3 NC_005045.1 + 14918 0.75 0.137669
Target:  5'- -gGGCGGCAGUCGcGCCAGCAUccGCCg -3'
miRNA:   3'- ggUCGUCGUCGGUaCGGUCGUGc-UGG- -5'
22276 5' -57.3 NC_005045.1 + 2819 0.75 0.137669
Target:  5'- uCCAGCGauggguGCAGCCuuggcgGCCAGCGCuuCCa -3'
miRNA:   3'- -GGUCGU------CGUCGGua----CGGUCGUGcuGG- -5'
22276 5' -57.3 NC_005045.1 + 290 0.75 0.141582
Target:  5'- cCCAGCAGCcagGGCCAgaGCCAGggaaGACCg -3'
miRNA:   3'- -GGUCGUCG---UCGGUa-CGGUCgug-CUGG- -5'
22276 5' -57.3 NC_005045.1 + 42353 0.75 0.141582
Target:  5'- cCCAGCAGCcagGGCCAgaGCCAGggaaGACCg -3'
miRNA:   3'- -GGUCGUCG---UCGGUa-CGGUCgug-CUGG- -5'
22276 5' -57.3 NC_005045.1 + 21006 0.74 0.158272
Target:  5'- uCCAGCuccuGUAcuGCCA-GCCAGCACaGGCCc -3'
miRNA:   3'- -GGUCGu---CGU--CGGUaCGGUCGUG-CUGG- -5'
22276 5' -57.3 NC_005045.1 + 17874 0.74 0.158272
Target:  5'- cUCGGCGGCGGCCAUugcauugaacGCCucauGCACGAg- -3'
miRNA:   3'- -GGUCGUCGUCGGUA----------CGGu---CGUGCUgg -5'
22276 5' -57.3 NC_005045.1 + 32108 0.74 0.158272
Target:  5'- cUCuGCGGCucGGUCGUGCUGGCAUGGCUg -3'
miRNA:   3'- -GGuCGUCG--UCGGUACGGUCGUGCUGG- -5'
22276 5' -57.3 NC_005045.1 + 16977 0.73 0.191787
Target:  5'- uCCAGCAGCuugugcagGGCCA--CCAGCAgGugCa -3'
miRNA:   3'- -GGUCGUCG--------UCGGUacGGUCGUgCugG- -5'
22276 5' -57.3 NC_005045.1 + 34438 0.73 0.197055
Target:  5'- aCAGCgggccAGCGGCC-UGaCCAGCGCcACCa -3'
miRNA:   3'- gGUCG-----UCGUCGGuAC-GGUCGUGcUGG- -5'
22276 5' -57.3 NC_005045.1 + 35349 0.72 0.21362
Target:  5'- gCCGGCAGUguAGCCgAUGCCGuCgAUGGCCa -3'
miRNA:   3'- -GGUCGUCG--UCGG-UACGGUcG-UGCUGG- -5'
22276 5' -57.3 NC_005045.1 + 41506 0.72 0.225317
Target:  5'- --cGCAGCAGCCAcUGCCcuGgGCGGCg -3'
miRNA:   3'- gguCGUCGUCGGU-ACGGu-CgUGCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.