miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22276 5' -57.3 NC_005045.1 + 290 0.75 0.141582
Target:  5'- cCCAGCAGCcagGGCCAgaGCCAGggaaGACCg -3'
miRNA:   3'- -GGUCGUCG---UCGGUa-CGGUCgug-CUGG- -5'
22276 5' -57.3 NC_005045.1 + 377 0.67 0.448704
Target:  5'- -aGGCgAGCgAGCCuggcaCCAGCGCGACg -3'
miRNA:   3'- ggUCG-UCG-UCGGuac--GGUCGUGCUGg -5'
22276 5' -57.3 NC_005045.1 + 681 0.79 0.073312
Target:  5'- aCCAGCGGCAGCaCAaGCaCAGCGCcagggagguaGACCa -3'
miRNA:   3'- -GGUCGUCGUCG-GUaCG-GUCGUG----------CUGG- -5'
22276 5' -57.3 NC_005045.1 + 832 0.7 0.307204
Target:  5'- cCCAgGgAGCAGCCAcccaGCCAGgACcACCa -3'
miRNA:   3'- -GGU-CgUCGUCGGUa---CGGUCgUGcUGG- -5'
22276 5' -57.3 NC_005045.1 + 2275 0.82 0.047217
Target:  5'- gCAGCGGCGGCCAgguaGCCGGCACuGCg -3'
miRNA:   3'- gGUCGUCGUCGGUa---CGGUCGUGcUGg -5'
22276 5' -57.3 NC_005045.1 + 2525 0.69 0.339146
Target:  5'- aCCAGCGcauuGCGGCgGcUGCCauuaGGCAUGGCUu -3'
miRNA:   3'- -GGUCGU----CGUCGgU-ACGG----UCGUGCUGG- -5'
22276 5' -57.3 NC_005045.1 + 2636 0.66 0.498733
Target:  5'- aCCAGgAGUuuaaccuGGCCGcUGCCcuGGCcACGAUCa -3'
miRNA:   3'- -GGUCgUCG-------UCGGU-ACGG--UCG-UGCUGG- -5'
22276 5' -57.3 NC_005045.1 + 2703 0.66 0.485206
Target:  5'- -gGGCAGCGGCCAgguuaaacuccugGuCCAGCGCuuUCu -3'
miRNA:   3'- ggUCGUCGUCGGUa------------C-GGUCGUGcuGG- -5'
22276 5' -57.3 NC_005045.1 + 2776 0.71 0.263691
Target:  5'- cCCAGCAGUu-CCAUGCCG--ACGAUCa -3'
miRNA:   3'- -GGUCGUCGucGGUACGGUcgUGCUGG- -5'
22276 5' -57.3 NC_005045.1 + 2819 0.75 0.137669
Target:  5'- uCCAGCGauggguGCAGCCuuggcgGCCAGCGCuuCCa -3'
miRNA:   3'- -GGUCGU------CGUCGGua----CGGUCGUGcuGG- -5'
22276 5' -57.3 NC_005045.1 + 2844 0.69 0.364643
Target:  5'- cCCGGCGggccgcugcaacGCAGCCGacaugGCgCuGUGCGACCa -3'
miRNA:   3'- -GGUCGU------------CGUCGGUa----CG-GuCGUGCUGG- -5'
22276 5' -57.3 NC_005045.1 + 2924 0.68 0.391435
Target:  5'- gCA-CAGC-GCCAUGUCGGCugcguugcaGCGGCCc -3'
miRNA:   3'- gGUcGUCGuCGGUACGGUCG---------UGCUGG- -5'
22276 5' -57.3 NC_005045.1 + 3402 0.68 0.409995
Target:  5'- gUCAGCccaucaGGCGGCUGUGCCuucguguggAGUcgcaaGCGACCu -3'
miRNA:   3'- -GGUCG------UCGUCGGUACGG---------UCG-----UGCUGG- -5'
22276 5' -57.3 NC_005045.1 + 4107 0.67 0.479021
Target:  5'- -aGGCAGCAGUacagGCCgAGUACGAa- -3'
miRNA:   3'- ggUCGUCGUCGgua-CGG-UCGUGCUgg -5'
22276 5' -57.3 NC_005045.1 + 4135 0.78 0.084761
Target:  5'- gCAGUAGCAGgCGccUGCCAGCA-GGCCg -3'
miRNA:   3'- gGUCGUCGUCgGU--ACGGUCGUgCUGG- -5'
22276 5' -57.3 NC_005045.1 + 4276 0.66 0.489349
Target:  5'- cCCGGuCAGUAGgcCCcgGCCuacuGCACGuaguGCCa -3'
miRNA:   3'- -GGUC-GUCGUC--GGuaCGGu---CGUGC----UGG- -5'
22276 5' -57.3 NC_005045.1 + 4400 0.69 0.355999
Target:  5'- aUCGGCguAGCAGCUuggGaCAGCACgGGCCg -3'
miRNA:   3'- -GGUCG--UCGUCGGua-CgGUCGUG-CUGG- -5'
22276 5' -57.3 NC_005045.1 + 5024 0.68 0.391435
Target:  5'- uCCAGCAGCuuGGCCGgugcGCUgucgcugaAGCG-GACCa -3'
miRNA:   3'- -GGUCGUCG--UCGGUa---CGG--------UCGUgCUGG- -5'
22276 5' -57.3 NC_005045.1 + 5230 0.66 0.531635
Target:  5'- -aAGCuGCccuGGCCguGUGCCAGCAgCGGgCa -3'
miRNA:   3'- ggUCGuCG---UCGG--UACGGUCGU-GCUgG- -5'
22276 5' -57.3 NC_005045.1 + 5497 0.67 0.438835
Target:  5'- gUCAGCAGgcauacccaGGCCAugaugguugccuUGCgAGCGCGGCg -3'
miRNA:   3'- -GGUCGUCg--------UCGGU------------ACGgUCGUGCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.