miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22276 5' -57.3 NC_005045.1 + 2844 0.69 0.364643
Target:  5'- cCCGGCGggccgcugcaacGCAGCCGacaugGCgCuGUGCGACCa -3'
miRNA:   3'- -GGUCGU------------CGUCGGUa----CG-GuCGUGCUGG- -5'
22276 5' -57.3 NC_005045.1 + 29748 0.7 0.299586
Target:  5'- aCAGCGGgUGGCCAacggUGCCAuCACaGACCu -3'
miRNA:   3'- gGUCGUC-GUCGGU----ACGGUcGUG-CUGG- -5'
22276 5' -57.3 NC_005045.1 + 31896 0.7 0.314968
Target:  5'- uCCAgGCGGCAGgUAU-CCAGC-CGACUg -3'
miRNA:   3'- -GGU-CGUCGUCgGUAcGGUCGuGCUGG- -5'
22276 5' -57.3 NC_005045.1 + 28154 0.7 0.314968
Target:  5'- aUAGCGcuguGguGCCGcUGCCGGCACGggucgauaugGCCa -3'
miRNA:   3'- gGUCGU----CguCGGU-ACGGUCGUGC----------UGG- -5'
22276 5' -57.3 NC_005045.1 + 18686 0.69 0.353434
Target:  5'- aCCuGgGGCGGCCcuggccggagcgugAUGCUGGCGCcGCCg -3'
miRNA:   3'- -GGuCgUCGUCGG--------------UACGGUCGUGcUGG- -5'
22276 5' -57.3 NC_005045.1 + 4400 0.69 0.355999
Target:  5'- aUCGGCguAGCAGCUuggGaCAGCACgGGCCg -3'
miRNA:   3'- -GGUCG--UCGUCGGua-CgGUCGUG-CUGG- -5'
22276 5' -57.3 NC_005045.1 + 23251 0.69 0.355999
Target:  5'- uCCAGCAGCAgGCuCcgGuCCAGCcCGGUCa -3'
miRNA:   3'- -GGUCGUCGU-CG-GuaC-GGUCGuGCUGG- -5'
22276 5' -57.3 NC_005045.1 + 16379 0.69 0.364643
Target:  5'- gCCGGCAgGCAGCC--GCCaaacguaaagcGGCgAUGGCCg -3'
miRNA:   3'- -GGUCGU-CGUCGGuaCGG-----------UCG-UGCUGG- -5'
22276 5' -57.3 NC_005045.1 + 23037 0.69 0.364643
Target:  5'- -gAGCAGCAGC---GUCAGCA-GGCCg -3'
miRNA:   3'- ggUCGUCGUCGguaCGGUCGUgCUGG- -5'
22276 5' -57.3 NC_005045.1 + 13836 0.7 0.295086
Target:  5'- gCAGCgcGGCAGCacuggugGCCAGCauugaaaccauacugGCGACCc -3'
miRNA:   3'- gGUCG--UCGUCGgua----CGGUCG---------------UGCUGG- -5'
22276 5' -57.3 NC_005045.1 + 25862 0.71 0.273376
Target:  5'- gCCAGCAGguGCCcUucgagcgccugccggGCCAGCucaGCGAgCa -3'
miRNA:   3'- -GGUCGUCguCGGuA---------------CGGUCG---UGCUgG- -5'
22276 5' -57.3 NC_005045.1 + 7207 0.71 0.263691
Target:  5'- aCGGCGGCccGCCuacggcGCCcGCAUGACCu -3'
miRNA:   3'- gGUCGUCGu-CGGua----CGGuCGUGCUGG- -5'
22276 5' -57.3 NC_005045.1 + 14831 0.76 0.12195
Target:  5'- gCCGGCAGU-GCCcaacgucgcggcggAUGCUGGCGCGACUg -3'
miRNA:   3'- -GGUCGUCGuCGG--------------UACGGUCGUGCUGG- -5'
22276 5' -57.3 NC_005045.1 + 32108 0.74 0.158272
Target:  5'- cUCuGCGGCucGGUCGUGCUGGCAUGGCUg -3'
miRNA:   3'- -GGuCGUCG--UCGGUACGGUCGUGCUGG- -5'
22276 5' -57.3 NC_005045.1 + 34438 0.73 0.197055
Target:  5'- aCAGCgggccAGCGGCC-UGaCCAGCGCcACCa -3'
miRNA:   3'- gGUCG-----UCGUCGGuAC-GGUCGUGcUGG- -5'
22276 5' -57.3 NC_005045.1 + 41506 0.72 0.225317
Target:  5'- --cGCAGCAGCCAcUGCCcuGgGCGGCg -3'
miRNA:   3'- gguCGUCGUCGGU-ACGGu-CgUGCUGg -5'
22276 5' -57.3 NC_005045.1 + 5749 0.72 0.231367
Target:  5'- gCgGGUAGCGGCCAgcuugUGCCAGgC-CGACg -3'
miRNA:   3'- -GgUCGUCGUCGGU-----ACGGUC-GuGCUGg -5'
22276 5' -57.3 NC_005045.1 + 18826 0.72 0.231367
Target:  5'- aCGGCAggcGCAGCUccGCCAcCugGGCCa -3'
miRNA:   3'- gGUCGU---CGUCGGuaCGGUcGugCUGG- -5'
22276 5' -57.3 NC_005045.1 + 27450 0.71 0.245802
Target:  5'- uCCAgGCGGCGGCCuccagcggcuaccugGUGuuugguaCCAGCACGGCg -3'
miRNA:   3'- -GGU-CGUCGUCGG---------------UAC-------GGUCGUGCUGg -5'
22276 5' -57.3 NC_005045.1 + 39407 0.71 0.256945
Target:  5'- aCCAGCcucgccgacgAGCAGCgUAUGCagcucaagcuGCGCGACCu -3'
miRNA:   3'- -GGUCG----------UCGUCG-GUACGgu--------CGUGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.