miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22292 3' -55 NC_005045.1 + 40960 0.65 0.661074
Target:  5'- uCGCAAUACuCGUCcuugCUGU-GGUAGCCc -3'
miRNA:   3'- uGCGUUAUG-GCGGa---GGUAuCCGUCGG- -5'
22292 3' -55 NC_005045.1 + 39370 0.65 0.661074
Target:  5'- cUGCGGgucaGCCGCCcagCCAc-GGguGCCg -3'
miRNA:   3'- uGCGUUa---UGGCGGa--GGUauCCguCGG- -5'
22292 3' -55 NC_005045.1 + 15157 0.65 0.661074
Target:  5'- gACGCcgacggccCCGCCUaCGUGGcuGCGGCCa -3'
miRNA:   3'- -UGCGuuau----GGCGGAgGUAUC--CGUCGG- -5'
22292 3' -55 NC_005045.1 + 7357 0.65 0.658815
Target:  5'- gGCGCAGUGCCauugguaccauuCCUCCcacaaAGGCcgcAGCCc -3'
miRNA:   3'- -UGCGUUAUGGc-----------GGAGGua---UCCG---UCGG- -5'
22292 3' -55 NC_005045.1 + 24135 0.66 0.64977
Target:  5'- uGCGCcAUACCuGCCUUacgacgcucgCGcAGcGCAGCCa -3'
miRNA:   3'- -UGCGuUAUGG-CGGAG----------GUaUC-CGUCGG- -5'
22292 3' -55 NC_005045.1 + 36010 0.66 0.64977
Target:  5'- gGCGCAG---CGCCUCauu-GGCGGCg -3'
miRNA:   3'- -UGCGUUaugGCGGAGguauCCGUCGg -5'
22292 3' -55 NC_005045.1 + 28893 0.66 0.64977
Target:  5'- uUGCGAUuccgccaucaGuuGCCUCCuuUAGGCGuggcGCCg -3'
miRNA:   3'- uGCGUUA----------UggCGGAGGu-AUCCGU----CGG- -5'
22292 3' -55 NC_005045.1 + 22413 0.66 0.638449
Target:  5'- gACGUg--GCCGCgaCCGUAGuGCucGCCa -3'
miRNA:   3'- -UGCGuuaUGGCGgaGGUAUC-CGu-CGG- -5'
22292 3' -55 NC_005045.1 + 28156 0.66 0.627122
Target:  5'- aGCGCugugGUGCCGCUgCCGgcacGGGUcgauauGGCCa -3'
miRNA:   3'- -UGCGu---UAUGGCGGaGGUa---UCCG------UCGG- -5'
22292 3' -55 NC_005045.1 + 29978 0.66 0.624857
Target:  5'- gGCGUugaugucccCCGCUUCCA-GGGCcGCCa -3'
miRNA:   3'- -UGCGuuau-----GGCGGAGGUaUCCGuCGG- -5'
22292 3' -55 NC_005045.1 + 18488 0.66 0.604493
Target:  5'- gACGCGGUGCUGCC-CgAagAGGCAcgaaucgaccuGCCc -3'
miRNA:   3'- -UGCGUUAUGGCGGaGgUa-UCCGU-----------CGG- -5'
22292 3' -55 NC_005045.1 + 13237 0.67 0.59772
Target:  5'- gGCGcCAGUACCGCCggggauucuGGCAagcGCCg -3'
miRNA:   3'- -UGC-GUUAUGGCGGagguau---CCGU---CGG- -5'
22292 3' -55 NC_005045.1 + 10368 0.67 0.592085
Target:  5'- cGCGCAagucccaccucguGUACgaugagCGCCgcgCCAUGGuccGCAGCCu -3'
miRNA:   3'- -UGCGU-------------UAUG------GCGGa--GGUAUC---CGUCGG- -5'
22292 3' -55 NC_005045.1 + 26631 0.67 0.581964
Target:  5'- aAUGCGAUguacccguccuGCaCGCC-CCGUugguugAGGUAGCCg -3'
miRNA:   3'- -UGCGUUA-----------UG-GCGGaGGUA------UCCGUCGG- -5'
22292 3' -55 NC_005045.1 + 29615 0.67 0.581964
Target:  5'- uGCGCGAcGCCgGCUUCCu--GGaCAGCa -3'
miRNA:   3'- -UGCGUUaUGG-CGGAGGuauCC-GUCGg -5'
22292 3' -55 NC_005045.1 + 9285 0.67 0.575236
Target:  5'- cACGCAugaccuguugauCCGCa-CCGUugAGGCGGCCu -3'
miRNA:   3'- -UGCGUuau---------GGCGgaGGUA--UCCGUCGG- -5'
22292 3' -55 NC_005045.1 + 41658 0.67 0.570761
Target:  5'- cACGgAAccACCGCCgUCCAcGGGCAGg- -3'
miRNA:   3'- -UGCgUUa-UGGCGG-AGGUaUCCGUCgg -5'
22292 3' -55 NC_005045.1 + 236 0.67 0.548522
Target:  5'- cCGCAGgg-CGCUggguaugagCCgAUGGGCAGCCa -3'
miRNA:   3'- uGCGUUaugGCGGa--------GG-UAUCCGUCGG- -5'
22292 3' -55 NC_005045.1 + 42299 0.67 0.548522
Target:  5'- cCGCAGgg-CGCUggguaugagCCgAUGGGCAGCCa -3'
miRNA:   3'- uGCGUUaugGCGGa--------GG-UAUCCGUCGG- -5'
22292 3' -55 NC_005045.1 + 2436 0.67 0.548522
Target:  5'- gGCGCuguAUGaaGCCaugCCuaauGGCAGCCg -3'
miRNA:   3'- -UGCGu--UAUggCGGa--GGuau-CCGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.