Results 1 - 20 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22315 | 5' | -55.8 | NC_005045.1 | + | 23328 | 0.66 | 0.622491 |
Target: 5'- cCACC-UgACCGGGCUGG--ACCGgAGCc -3' miRNA: 3'- -GUGGuAgUGGCUCGACCgcUGGU-UCG- -5' |
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22315 | 5' | -55.8 | NC_005045.1 | + | 2714 | 0.66 | 0.622491 |
Target: 5'- gAUCGUgGCCaGGGCa-GCGGCCAGGUu -3' miRNA: 3'- gUGGUAgUGG-CUCGacCGCUGGUUCG- -5' |
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22315 | 5' | -55.8 | NC_005045.1 | + | 20852 | 0.66 | 0.611295 |
Target: 5'- aCGCCAUCGCagugGAGUUGcGCuaauGACCAaauccaucuGGCg -3' miRNA: 3'- -GUGGUAGUGg---CUCGAC-CG----CUGGU---------UCG- -5' |
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22315 | 5' | -55.8 | NC_005045.1 | + | 32443 | 0.66 | 0.600117 |
Target: 5'- cUACCAcgUCACCGGccuugaagccGCgugcGGCGGCCuccucGGCg -3' miRNA: 3'- -GUGGU--AGUGGCU----------CGa---CCGCUGGu----UCG- -5' |
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22315 | 5' | -55.8 | NC_005045.1 | + | 12449 | 0.66 | 0.596768 |
Target: 5'- aCGCCcUCaaggcucuggagaaACaGGGCUucgaGGCGGCCAAGCu -3' miRNA: 3'- -GUGGuAG--------------UGgCUCGA----CCGCUGGUUCG- -5' |
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22315 | 5' | -55.8 | NC_005045.1 | + | 40826 | 0.66 | 0.588967 |
Target: 5'- aACCAagGCCGcGCcacugagGGCuGCCAAGCc -3' miRNA: 3'- gUGGUagUGGCuCGa------CCGcUGGUUCG- -5' |
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22315 | 5' | -55.8 | NC_005045.1 | + | 13238 | 0.66 | 0.577855 |
Target: 5'- gCGCCAguacCGCCGGGgauuCUGGCaagcGCCGGGUg -3' miRNA: 3'- -GUGGUa---GUGGCUC----GACCGc---UGGUUCG- -5' |
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22315 | 5' | -55.8 | NC_005045.1 | + | 6415 | 0.66 | 0.577855 |
Target: 5'- aUACCGcuUCGgcgUCGAGCUGGagGACgAAGCc -3' miRNA: 3'- -GUGGU--AGU---GGCUCGACCg-CUGgUUCG- -5' |
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22315 | 5' | -55.8 | NC_005045.1 | + | 34489 | 0.67 | 0.56679 |
Target: 5'- gGCCcgCugugcaacgggGCCGAGCUGGUGcUCAcGCg -3' miRNA: 3'- gUGGuaG-----------UGGCUCGACCGCuGGUuCG- -5' |
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22315 | 5' | -55.8 | NC_005045.1 | + | 36014 | 0.67 | 0.56679 |
Target: 5'- --aCAUCGauCCGAGCUGGCGugguuacuggaACCGcuGCa -3' miRNA: 3'- gugGUAGU--GGCUCGACCGC-----------UGGUu-CG- -5' |
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22315 | 5' | -55.8 | NC_005045.1 | + | 39468 | 0.67 | 0.555779 |
Target: 5'- uGCuCGUCGgCGAgGCUGGUGuCCA-GCa -3' miRNA: 3'- gUG-GUAGUgGCU-CGACCGCuGGUuCG- -5' |
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22315 | 5' | -55.8 | NC_005045.1 | + | 16458 | 0.67 | 0.555779 |
Target: 5'- gGCCAUCGCCGcuuuacGuUUGGCGGCUGccugccGGCg -3' miRNA: 3'- gUGGUAGUGGCu-----C-GACCGCUGGU------UCG- -5' |
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22315 | 5' | -55.8 | NC_005045.1 | + | 33202 | 0.67 | 0.554681 |
Target: 5'- aCGCCAU-GCCGGGUUacaccaaGGCucaGGCCAAGUg -3' miRNA: 3'- -GUGGUAgUGGCUCGA-------CCG---CUGGUUCG- -5' |
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22315 | 5' | -55.8 | NC_005045.1 | + | 26585 | 0.67 | 0.544831 |
Target: 5'- cUAUgGUUGCCGcGUUGGCGuCCGGGUc -3' miRNA: 3'- -GUGgUAGUGGCuCGACCGCuGGUUCG- -5' |
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22315 | 5' | -55.8 | NC_005045.1 | + | 33424 | 0.67 | 0.544831 |
Target: 5'- gCGCCcUCuCCGGGCUGG--GCCAGGa -3' miRNA: 3'- -GUGGuAGuGGCUCGACCgcUGGUUCg -5' |
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22315 | 5' | -55.8 | NC_005045.1 | + | 2865 | 0.67 | 0.544831 |
Target: 5'- aGCCGaCAUgGcGCUGuGCGACCAuGGCu -3' miRNA: 3'- gUGGUaGUGgCuCGAC-CGCUGGU-UCG- -5' |
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22315 | 5' | -55.8 | NC_005045.1 | + | 16503 | 0.67 | 0.544831 |
Target: 5'- gGCCucaagaagggCGCCGAGCaccUGACCGAGCa -3' miRNA: 3'- gUGGua--------GUGGCUCGaccGCUGGUUCG- -5' |
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22315 | 5' | -55.8 | NC_005045.1 | + | 30512 | 0.67 | 0.533954 |
Target: 5'- gACCAUCGaCGAGgcgaaCUGGCuGGCCA-GCg -3' miRNA: 3'- gUGGUAGUgGCUC-----GACCG-CUGGUuCG- -5' |
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22315 | 5' | -55.8 | NC_005045.1 | + | 28508 | 0.67 | 0.533954 |
Target: 5'- gGCCAUgAcuCCGAgGUUGGCGAUaucgCGGGCa -3' miRNA: 3'- gUGGUAgU--GGCU-CGACCGCUG----GUUCG- -5' |
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22315 | 5' | -55.8 | NC_005045.1 | + | 41579 | 0.67 | 0.523156 |
Target: 5'- cCGCCcUCGCCGcccagggcaguGGCUGcuGCGAUCAcAGCg -3' miRNA: 3'- -GUGGuAGUGGC-----------UCGAC--CGCUGGU-UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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