miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22315 5' -55.8 NC_005045.1 + 23328 0.66 0.622491
Target:  5'- cCACC-UgACCGGGCUGG--ACCGgAGCc -3'
miRNA:   3'- -GUGGuAgUGGCUCGACCgcUGGU-UCG- -5'
22315 5' -55.8 NC_005045.1 + 2714 0.66 0.622491
Target:  5'- gAUCGUgGCCaGGGCa-GCGGCCAGGUu -3'
miRNA:   3'- gUGGUAgUGG-CUCGacCGCUGGUUCG- -5'
22315 5' -55.8 NC_005045.1 + 20852 0.66 0.611295
Target:  5'- aCGCCAUCGCagugGAGUUGcGCuaauGACCAaauccaucuGGCg -3'
miRNA:   3'- -GUGGUAGUGg---CUCGAC-CG----CUGGU---------UCG- -5'
22315 5' -55.8 NC_005045.1 + 32443 0.66 0.600117
Target:  5'- cUACCAcgUCACCGGccuugaagccGCgugcGGCGGCCuccucGGCg -3'
miRNA:   3'- -GUGGU--AGUGGCU----------CGa---CCGCUGGu----UCG- -5'
22315 5' -55.8 NC_005045.1 + 12449 0.66 0.596768
Target:  5'- aCGCCcUCaaggcucuggagaaACaGGGCUucgaGGCGGCCAAGCu -3'
miRNA:   3'- -GUGGuAG--------------UGgCUCGA----CCGCUGGUUCG- -5'
22315 5' -55.8 NC_005045.1 + 40826 0.66 0.588967
Target:  5'- aACCAagGCCGcGCcacugagGGCuGCCAAGCc -3'
miRNA:   3'- gUGGUagUGGCuCGa------CCGcUGGUUCG- -5'
22315 5' -55.8 NC_005045.1 + 13238 0.66 0.577855
Target:  5'- gCGCCAguacCGCCGGGgauuCUGGCaagcGCCGGGUg -3'
miRNA:   3'- -GUGGUa---GUGGCUC----GACCGc---UGGUUCG- -5'
22315 5' -55.8 NC_005045.1 + 6415 0.66 0.577855
Target:  5'- aUACCGcuUCGgcgUCGAGCUGGagGACgAAGCc -3'
miRNA:   3'- -GUGGU--AGU---GGCUCGACCg-CUGgUUCG- -5'
22315 5' -55.8 NC_005045.1 + 34489 0.67 0.56679
Target:  5'- gGCCcgCugugcaacgggGCCGAGCUGGUGcUCAcGCg -3'
miRNA:   3'- gUGGuaG-----------UGGCUCGACCGCuGGUuCG- -5'
22315 5' -55.8 NC_005045.1 + 36014 0.67 0.56679
Target:  5'- --aCAUCGauCCGAGCUGGCGugguuacuggaACCGcuGCa -3'
miRNA:   3'- gugGUAGU--GGCUCGACCGC-----------UGGUu-CG- -5'
22315 5' -55.8 NC_005045.1 + 39468 0.67 0.555779
Target:  5'- uGCuCGUCGgCGAgGCUGGUGuCCA-GCa -3'
miRNA:   3'- gUG-GUAGUgGCU-CGACCGCuGGUuCG- -5'
22315 5' -55.8 NC_005045.1 + 16458 0.67 0.555779
Target:  5'- gGCCAUCGCCGcuuuacGuUUGGCGGCUGccugccGGCg -3'
miRNA:   3'- gUGGUAGUGGCu-----C-GACCGCUGGU------UCG- -5'
22315 5' -55.8 NC_005045.1 + 33202 0.67 0.554681
Target:  5'- aCGCCAU-GCCGGGUUacaccaaGGCucaGGCCAAGUg -3'
miRNA:   3'- -GUGGUAgUGGCUCGA-------CCG---CUGGUUCG- -5'
22315 5' -55.8 NC_005045.1 + 26585 0.67 0.544831
Target:  5'- cUAUgGUUGCCGcGUUGGCGuCCGGGUc -3'
miRNA:   3'- -GUGgUAGUGGCuCGACCGCuGGUUCG- -5'
22315 5' -55.8 NC_005045.1 + 33424 0.67 0.544831
Target:  5'- gCGCCcUCuCCGGGCUGG--GCCAGGa -3'
miRNA:   3'- -GUGGuAGuGGCUCGACCgcUGGUUCg -5'
22315 5' -55.8 NC_005045.1 + 2865 0.67 0.544831
Target:  5'- aGCCGaCAUgGcGCUGuGCGACCAuGGCu -3'
miRNA:   3'- gUGGUaGUGgCuCGAC-CGCUGGU-UCG- -5'
22315 5' -55.8 NC_005045.1 + 16503 0.67 0.544831
Target:  5'- gGCCucaagaagggCGCCGAGCaccUGACCGAGCa -3'
miRNA:   3'- gUGGua--------GUGGCUCGaccGCUGGUUCG- -5'
22315 5' -55.8 NC_005045.1 + 30512 0.67 0.533954
Target:  5'- gACCAUCGaCGAGgcgaaCUGGCuGGCCA-GCg -3'
miRNA:   3'- gUGGUAGUgGCUC-----GACCG-CUGGUuCG- -5'
22315 5' -55.8 NC_005045.1 + 28508 0.67 0.533954
Target:  5'- gGCCAUgAcuCCGAgGUUGGCGAUaucgCGGGCa -3'
miRNA:   3'- gUGGUAgU--GGCU-CGACCGCUG----GUUCG- -5'
22315 5' -55.8 NC_005045.1 + 41579 0.67 0.523156
Target:  5'- cCGCCcUCGCCGcccagggcaguGGCUGcuGCGAUCAcAGCg -3'
miRNA:   3'- -GUGGuAGUGGC-----------UCGAC--CGCUGGU-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.