Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22337 | 3' | -58.7 | NC_005045.1 | + | 26430 | 0.66 | 0.487371 |
Target: 5'- uGCUGGCGuuguCCGGCGuCaCGuaaGugGCCg -3' miRNA: 3'- gUGACCGU----GGCCGU-GaGCug-CugCGG- -5' |
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22337 | 3' | -58.7 | NC_005045.1 | + | 8783 | 0.66 | 0.487371 |
Target: 5'- aGCc-GCGCCuGUACUCGGCGGC-CCu -3' miRNA: 3'- gUGacCGUGGcCGUGAGCUGCUGcGG- -5' |
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22337 | 3' | -58.7 | NC_005045.1 | + | 39399 | 0.66 | 0.47729 |
Target: 5'- uGCUGGaCACCaGC-CUCGcCGACGa- -3' miRNA: 3'- gUGACC-GUGGcCGuGAGCuGCUGCgg -5' |
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22337 | 3' | -58.7 | NC_005045.1 | + | 22442 | 0.66 | 0.467313 |
Target: 5'- aGCuUGGCgaagucGCCGauGUAgucCUCGACGugGCCg -3' miRNA: 3'- gUG-ACCG------UGGC--CGU---GAGCUGCugCGG- -5' |
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22337 | 3' | -58.7 | NC_005045.1 | + | 25010 | 0.66 | 0.467313 |
Target: 5'- -uCUGGCGCucggacuccuCGGCACUCacguugaaguGACGGC-CCa -3' miRNA: 3'- guGACCGUG----------GCCGUGAG----------CUGCUGcGG- -5' |
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22337 | 3' | -58.7 | NC_005045.1 | + | 8622 | 0.66 | 0.467313 |
Target: 5'- cCACgccggGGCcUCGGUGCUgGugGcaGCGCCu -3' miRNA: 3'- -GUGa----CCGuGGCCGUGAgCugC--UGCGG- -5' |
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22337 | 3' | -58.7 | NC_005045.1 | + | 40402 | 0.66 | 0.457444 |
Target: 5'- -uCUGuGCugCGGUACUCaccgcgcucuauGugGGCGCa -3' miRNA: 3'- guGAC-CGugGCCGUGAG------------CugCUGCGg -5' |
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22337 | 3' | -58.7 | NC_005045.1 | + | 4958 | 0.66 | 0.447688 |
Target: 5'- gACaGcGCACCGGCcaagcuGCUgGACGugaagccaGCGCCa -3' miRNA: 3'- gUGaC-CGUGGCCG------UGAgCUGC--------UGCGG- -5' |
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22337 | 3' | -58.7 | NC_005045.1 | + | 12411 | 0.67 | 0.438049 |
Target: 5'- -cCUGGCGgauggaucgcCCGuguucaGCACcagCGGCGACGCCc -3' miRNA: 3'- guGACCGU----------GGC------CGUGa--GCUGCUGCGG- -5' |
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22337 | 3' | -58.7 | NC_005045.1 | + | 16367 | 0.67 | 0.437092 |
Target: 5'- aGCUGGCcaagcGCCGGCaggcagccgccaaACguaaagCGGCGAUgGCCg -3' miRNA: 3'- gUGACCG-----UGGCCG-------------UGa-----GCUGCUG-CGG- -5' |
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22337 | 3' | -58.7 | NC_005045.1 | + | 5901 | 0.67 | 0.428529 |
Target: 5'- aGCUGGCgguaaACCGuGCcCUgCG-CGAUGCCg -3' miRNA: 3'- gUGACCG-----UGGC-CGuGA-GCuGCUGCGG- -5' |
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22337 | 3' | -58.7 | NC_005045.1 | + | 15847 | 0.67 | 0.419134 |
Target: 5'- cCGCUGGCggagGCCGagguGCugUgGAUG-CGCCg -3' miRNA: 3'- -GUGACCG----UGGC----CGugAgCUGCuGCGG- -5' |
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22337 | 3' | -58.7 | NC_005045.1 | + | 26862 | 0.67 | 0.409863 |
Target: 5'- cCACUGGC-CCuGCGCUgGgAUGAgGCUa -3' miRNA: 3'- -GUGACCGuGGcCGUGAgC-UGCUgCGG- -5' |
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22337 | 3' | -58.7 | NC_005045.1 | + | 37299 | 0.67 | 0.409863 |
Target: 5'- cCugUGGCugaguUUGGCACUCG-CGGCaGUCu -3' miRNA: 3'- -GugACCGu----GGCCGUGAGCuGCUG-CGG- -5' |
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22337 | 3' | -58.7 | NC_005045.1 | + | 31869 | 0.67 | 0.409863 |
Target: 5'- aCGCUGGgACCuaugggguccaGGCGCUCcaGGCGGCagguauccaGCCg -3' miRNA: 3'- -GUGACCgUGG-----------CCGUGAG--CUGCUG---------CGG- -5' |
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22337 | 3' | -58.7 | NC_005045.1 | + | 25125 | 0.67 | 0.409863 |
Target: 5'- aACUgaagGGUAUCGGCGCcuUCGACaucaccgcguGAUGCCa -3' miRNA: 3'- gUGA----CCGUGGCCGUG--AGCUG----------CUGCGG- -5' |
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22337 | 3' | -58.7 | NC_005045.1 | + | 31513 | 0.67 | 0.409863 |
Target: 5'- ---gGGCGCCauGCGCUUGAUGaAUGCCu -3' miRNA: 3'- gugaCCGUGGc-CGUGAGCUGC-UGCGG- -5' |
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22337 | 3' | -58.7 | NC_005045.1 | + | 13233 | 0.67 | 0.399815 |
Target: 5'- aACUGGCGCCaGUAC-CGcCGgggauucuggcaaGCGCCg -3' miRNA: 3'- gUGACCGUGGcCGUGaGCuGC-------------UGCGG- -5' |
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22337 | 3' | -58.7 | NC_005045.1 | + | 13289 | 0.67 | 0.391712 |
Target: 5'- gUACUGGCGCCaguugccauccGGCcccauCUCGcugaaGGCGCCu -3' miRNA: 3'- -GUGACCGUGG-----------CCGu----GAGCug---CUGCGG- -5' |
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22337 | 3' | -58.7 | NC_005045.1 | + | 26574 | 0.67 | 0.391712 |
Target: 5'- gACgGGUACaucGCAUUCcguGGCGACGCCg -3' miRNA: 3'- gUGaCCGUGgc-CGUGAG---CUGCUGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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