miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22337 3' -58.7 NC_005045.1 + 16367 0.67 0.437092
Target:  5'- aGCUGGCcaagcGCCGGCaggcagccgccaaACguaaagCGGCGAUgGCCg -3'
miRNA:   3'- gUGACCG-----UGGCCG-------------UGa-----GCUGCUG-CGG- -5'
22337 3' -58.7 NC_005045.1 + 26574 0.67 0.391712
Target:  5'- gACgGGUACaucGCAUUCcguGGCGACGCCg -3'
miRNA:   3'- gUGaCCGUGgc-CGUGAG---CUGCUGCGG- -5'
22337 3' -58.7 NC_005045.1 + 13233 0.67 0.399815
Target:  5'- aACUGGCGCCaGUAC-CGcCGgggauucuggcaaGCGCCg -3'
miRNA:   3'- gUGACCGUGGcCGUGaGCuGC-------------UGCGG- -5'
22337 3' -58.7 NC_005045.1 + 26862 0.67 0.409863
Target:  5'- cCACUGGC-CCuGCGCUgGgAUGAgGCUa -3'
miRNA:   3'- -GUGACCGuGGcCGUGAgC-UGCUgCGG- -5'
22337 3' -58.7 NC_005045.1 + 25125 0.67 0.409863
Target:  5'- aACUgaagGGUAUCGGCGCcuUCGACaucaccgcguGAUGCCa -3'
miRNA:   3'- gUGA----CCGUGGCCGUG--AGCUG----------CUGCGG- -5'
22337 3' -58.7 NC_005045.1 + 31869 0.67 0.409863
Target:  5'- aCGCUGGgACCuaugggguccaGGCGCUCcaGGCGGCagguauccaGCCg -3'
miRNA:   3'- -GUGACCgUGG-----------CCGUGAG--CUGCUG---------CGG- -5'
22337 3' -58.7 NC_005045.1 + 37299 0.67 0.409863
Target:  5'- cCugUGGCugaguUUGGCACUCG-CGGCaGUCu -3'
miRNA:   3'- -GugACCGu----GGCCGUGAGCuGCUG-CGG- -5'
22337 3' -58.7 NC_005045.1 + 15847 0.67 0.419134
Target:  5'- cCGCUGGCggagGCCGagguGCugUgGAUG-CGCCg -3'
miRNA:   3'- -GUGACCG----UGGC----CGugAgCUGCuGCGG- -5'
22337 3' -58.7 NC_005045.1 + 5901 0.67 0.428529
Target:  5'- aGCUGGCgguaaACCGuGCcCUgCG-CGAUGCCg -3'
miRNA:   3'- gUGACCG-----UGGC-CGuGA-GCuGCUGCGG- -5'
22337 3' -58.7 NC_005045.1 + 21045 0.68 0.381954
Target:  5'- uGCUGGUAUuccgcgaUGGCcaguugGC-CGGCGGCGCCu -3'
miRNA:   3'- gUGACCGUG-------GCCG------UGaGCUGCUGCGG- -5'
22337 3' -58.7 NC_005045.1 + 35923 0.68 0.374092
Target:  5'- uCGCcuGCACaggaaGCACUCGACGcCGCCa -3'
miRNA:   3'- -GUGacCGUGgc---CGUGAGCUGCuGCGG- -5'
22337 3' -58.7 NC_005045.1 + 35442 0.69 0.332447
Target:  5'- aGCcGcCACCGGCGauaUCGucaGCGGCGCCg -3'
miRNA:   3'- gUGaCcGUGGCCGUg--AGC---UGCUGCGG- -5'
22337 3' -58.7 NC_005045.1 + 11590 0.77 0.093085
Target:  5'- gACgUGGCuguacCCGGCACUCGACGA-GCUg -3'
miRNA:   3'- gUG-ACCGu----GGCCGUGAGCUGCUgCGG- -5'
22337 3' -58.7 NC_005045.1 + 8465 0.73 0.170803
Target:  5'- aGCU-GCGCCGGCugagCGACGAgGCCc -3'
miRNA:   3'- gUGAcCGUGGCCGuga-GCUGCUgCGG- -5'
22337 3' -58.7 NC_005045.1 + 10695 0.72 0.211246
Target:  5'- aGCUGGaagaugguuCCGGCAC-CGugGcCGCCa -3'
miRNA:   3'- gUGACCgu-------GGCCGUGaGCugCuGCGG- -5'
22337 3' -58.7 NC_005045.1 + 32124 0.71 0.240523
Target:  5'- uGCUGGCA-UGGCuGCUgcUGGCGGCGCUg -3'
miRNA:   3'- gUGACCGUgGCCG-UGA--GCUGCUGCGG- -5'
22337 3' -58.7 NC_005045.1 + 39276 0.7 0.280035
Target:  5'- ---cGcGCACCGGCAagggcCUCGACGGCaCCc -3'
miRNA:   3'- gugaC-CGUGGCCGU-----GAGCUGCUGcGG- -5'
22337 3' -58.7 NC_005045.1 + 19807 0.7 0.284967
Target:  5'- aCGCUGGUAUaCGGCACcacguucaagggcgUCGugGACcacuGCCu -3'
miRNA:   3'- -GUGACCGUG-GCCGUG--------------AGCugCUG----CGG- -5'
22337 3' -58.7 NC_005045.1 + 18213 0.69 0.316769
Target:  5'- gGCcGGCAgccaagcuCCGGCACUUGcugcggaucauCGACGCCc -3'
miRNA:   3'- gUGaCCGU--------GGCCGUGAGCu----------GCUGCGG- -5'
22337 3' -58.7 NC_005045.1 + 2952 0.69 0.331649
Target:  5'- ---gGGCGCCGGCgugaccgugaaccGCUaCGACGAgGCg -3'
miRNA:   3'- gugaCCGUGGCCG-------------UGA-GCUGCUgCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.