miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22337 3' -58.7 NC_005045.1 + 7030 0.74 0.15751
Target:  5'- aUACUcGGCACCaGCcaGCUCGGCGGC-CCg -3'
miRNA:   3'- -GUGA-CCGUGGcCG--UGAGCUGCUGcGG- -5'
22337 3' -58.7 NC_005045.1 + 18696 0.68 0.365485
Target:  5'- -cCUGGCcuCCGGCgacgGCUCcagGugGACGCUc -3'
miRNA:   3'- guGACCGu-GGCCG----UGAG---CugCUGCGG- -5'
22337 3' -58.7 NC_005045.1 + 31033 0.69 0.332447
Target:  5'- -gUUGGCACC-GUACUCGGCGcccCGCa -3'
miRNA:   3'- guGACCGUGGcCGUGAGCUGCu--GCGg -5'
22337 3' -58.7 NC_005045.1 + 2655 0.69 0.324537
Target:  5'- aGCUGuacCACgGGCugUUGGUGGCGCCg -3'
miRNA:   3'- gUGACc--GUGgCCGugAGCUGCUGCGG- -5'
22337 3' -58.7 NC_005045.1 + 20960 0.69 0.316769
Target:  5'- ---gGGCGCCGGC-CUuugCGugGAcuCGCCa -3'
miRNA:   3'- gugaCCGUGGCCGuGA---GCugCU--GCGG- -5'
22337 3' -58.7 NC_005045.1 + 25939 0.69 0.301654
Target:  5'- aGCUGGC-CCGGCaggcGCUCGAagGGCaCCu -3'
miRNA:   3'- gUGACCGuGGCCG----UGAGCUg-CUGcGG- -5'
22337 3' -58.7 NC_005045.1 + 22442 0.66 0.467313
Target:  5'- aGCuUGGCgaagucGCCGauGUAgucCUCGACGugGCCg -3'
miRNA:   3'- gUG-ACCG------UGGC--CGU---GAGCUGCugCGG- -5'
22337 3' -58.7 NC_005045.1 + 25010 0.66 0.467313
Target:  5'- -uCUGGCGCucggacuccuCGGCACUCacguugaaguGACGGC-CCa -3'
miRNA:   3'- guGACCGUG----------GCCGUGAG----------CUGCUGcGG- -5'
22337 3' -58.7 NC_005045.1 + 255 0.68 0.382834
Target:  5'- gGCUGGCGCUGGUagcccAC-CGcAgGGCGCUg -3'
miRNA:   3'- gUGACCGUGGCCG-----UGaGC-UgCUGCGG- -5'
22337 3' -58.7 NC_005045.1 + 24412 0.68 0.365485
Target:  5'- uCACcGGCACgacggcccuUGGC-CUCGACGuuGCCc -3'
miRNA:   3'- -GUGaCCGUG---------GCCGuGAGCUGCugCGG- -5'
22337 3' -58.7 NC_005045.1 + 5057 0.69 0.324537
Target:  5'- gACUGGa--CGGCGCg-GAUGGCGCUg -3'
miRNA:   3'- gUGACCgugGCCGUGagCUGCUGCGG- -5'
22337 3' -58.7 NC_005045.1 + 36399 0.71 0.228425
Target:  5'- gCACcGGCuuggGCCGGCgaaUCuGCGACGCCa -3'
miRNA:   3'- -GUGaCCG----UGGCCGug-AGcUGCUGCGG- -5'
22337 3' -58.7 NC_005045.1 + 13289 0.67 0.391712
Target:  5'- gUACUGGCGCCaguugccauccGGCcccauCUCGcugaaGGCGCCu -3'
miRNA:   3'- -GUGACCGUGG-----------CCGu----GAGCug---CUGCGG- -5'
22337 3' -58.7 NC_005045.1 + 20907 0.7 0.266319
Target:  5'- cCACU-GCGauGGCGuCUCGGCGGCGCa -3'
miRNA:   3'- -GUGAcCGUggCCGU-GAGCUGCUGCGg -5'
22337 3' -58.7 NC_005045.1 + 4882 0.69 0.332447
Target:  5'- gGCUGG-ACaGGCGCUCGGCGGuuUGCa -3'
miRNA:   3'- gUGACCgUGgCCGUGAGCUGCU--GCGg -5'
22337 3' -58.7 NC_005045.1 + 31513 0.67 0.409863
Target:  5'- ---gGGCGCCauGCGCUUGAUGaAUGCCu -3'
miRNA:   3'- gugaCCGUGGc-CGUGAGCUGC-UGCGG- -5'
22337 3' -58.7 NC_005045.1 + 26430 0.66 0.487371
Target:  5'- uGCUGGCGuuguCCGGCGuCaCGuaaGugGCCg -3'
miRNA:   3'- gUGACCGU----GGCCGU-GaGCug-CugCGG- -5'
22337 3' -58.7 NC_005045.1 + 9548 0.7 0.273108
Target:  5'- uCGCgagGGaaccCACCGGC-CagGGCGACGCCc -3'
miRNA:   3'- -GUGa--CC----GUGGCCGuGagCUGCUGCGG- -5'
22337 3' -58.7 NC_005045.1 + 42318 0.68 0.382834
Target:  5'- gGCUGGCGCUGGUagcccAC-CGcAgGGCGCUg -3'
miRNA:   3'- gUGACCGUGGCCG-----UGaGC-UgCUGCGG- -5'
22337 3' -58.7 NC_005045.1 + 26862 0.67 0.409863
Target:  5'- cCACUGGC-CCuGCGCUgGgAUGAgGCUa -3'
miRNA:   3'- -GUGACCGuGGcCGUGAgC-UGCUgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.