Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22337 | 3' | -58.7 | NC_005045.1 | + | 255 | 0.68 | 0.382834 |
Target: 5'- gGCUGGCGCUGGUagcccAC-CGcAgGGCGCUg -3' miRNA: 3'- gUGACCGUGGCCG-----UGaGC-UgCUGCGG- -5' |
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22337 | 3' | -58.7 | NC_005045.1 | + | 2655 | 0.69 | 0.324537 |
Target: 5'- aGCUGuacCACgGGCugUUGGUGGCGCCg -3' miRNA: 3'- gUGACc--GUGgCCGugAGCUGCUGCGG- -5' |
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22337 | 3' | -58.7 | NC_005045.1 | + | 2952 | 0.69 | 0.331649 |
Target: 5'- ---gGGCGCCGGCgugaccgugaaccGCUaCGACGAgGCg -3' miRNA: 3'- gugaCCGUGGCCG-------------UGA-GCUGCUgCGg -5' |
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22337 | 3' | -58.7 | NC_005045.1 | + | 4882 | 0.69 | 0.332447 |
Target: 5'- gGCUGG-ACaGGCGCUCGGCGGuuUGCa -3' miRNA: 3'- gUGACCgUGgCCGUGAGCUGCU--GCGg -5' |
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22337 | 3' | -58.7 | NC_005045.1 | + | 4958 | 0.66 | 0.447688 |
Target: 5'- gACaGcGCACCGGCcaagcuGCUgGACGugaagccaGCGCCa -3' miRNA: 3'- gUGaC-CGUGGCCG------UGAgCUGC--------UGCGG- -5' |
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22337 | 3' | -58.7 | NC_005045.1 | + | 5057 | 0.69 | 0.324537 |
Target: 5'- gACUGGa--CGGCGCg-GAUGGCGCUg -3' miRNA: 3'- gUGACCgugGCCGUGagCUGCUGCGG- -5' |
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22337 | 3' | -58.7 | NC_005045.1 | + | 5901 | 0.67 | 0.428529 |
Target: 5'- aGCUGGCgguaaACCGuGCcCUgCG-CGAUGCCg -3' miRNA: 3'- gUGACCG-----UGGC-CGuGA-GCuGCUGCGG- -5' |
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22337 | 3' | -58.7 | NC_005045.1 | + | 7030 | 0.74 | 0.15751 |
Target: 5'- aUACUcGGCACCaGCcaGCUCGGCGGC-CCg -3' miRNA: 3'- -GUGA-CCGUGGcCG--UGAGCUGCUGcGG- -5' |
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22337 | 3' | -58.7 | NC_005045.1 | + | 8465 | 0.73 | 0.170803 |
Target: 5'- aGCU-GCGCCGGCugagCGACGAgGCCc -3' miRNA: 3'- gUGAcCGUGGCCGuga-GCUGCUgCGG- -5' |
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22337 | 3' | -58.7 | NC_005045.1 | + | 8622 | 0.66 | 0.467313 |
Target: 5'- cCACgccggGGCcUCGGUGCUgGugGcaGCGCCu -3' miRNA: 3'- -GUGa----CCGuGGCCGUGAgCugC--UGCGG- -5' |
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22337 | 3' | -58.7 | NC_005045.1 | + | 8783 | 0.66 | 0.487371 |
Target: 5'- aGCc-GCGCCuGUACUCGGCGGC-CCu -3' miRNA: 3'- gUGacCGUGGcCGUGAGCUGCUGcGG- -5' |
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22337 | 3' | -58.7 | NC_005045.1 | + | 9548 | 0.7 | 0.273108 |
Target: 5'- uCGCgagGGaaccCACCGGC-CagGGCGACGCCc -3' miRNA: 3'- -GUGa--CC----GUGGCCGuGagCUGCUGCGG- -5' |
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22337 | 3' | -58.7 | NC_005045.1 | + | 10695 | 0.72 | 0.211246 |
Target: 5'- aGCUGGaagaugguuCCGGCAC-CGugGcCGCCa -3' miRNA: 3'- gUGACCgu-------GGCCGUGaGCugCuGCGG- -5' |
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22337 | 3' | -58.7 | NC_005045.1 | + | 11590 | 0.77 | 0.093085 |
Target: 5'- gACgUGGCuguacCCGGCACUCGACGA-GCUg -3' miRNA: 3'- gUG-ACCGu----GGCCGUGAGCUGCUgCGG- -5' |
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22337 | 3' | -58.7 | NC_005045.1 | + | 12411 | 0.67 | 0.438049 |
Target: 5'- -cCUGGCGgauggaucgcCCGuguucaGCACcagCGGCGACGCCc -3' miRNA: 3'- guGACCGU----------GGC------CGUGa--GCUGCUGCGG- -5' |
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22337 | 3' | -58.7 | NC_005045.1 | + | 13233 | 0.67 | 0.399815 |
Target: 5'- aACUGGCGCCaGUAC-CGcCGgggauucuggcaaGCGCCg -3' miRNA: 3'- gUGACCGUGGcCGUGaGCuGC-------------UGCGG- -5' |
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22337 | 3' | -58.7 | NC_005045.1 | + | 13289 | 0.67 | 0.391712 |
Target: 5'- gUACUGGCGCCaguugccauccGGCcccauCUCGcugaaGGCGCCu -3' miRNA: 3'- -GUGACCGUGG-----------CCGu----GAGCug---CUGCGG- -5' |
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22337 | 3' | -58.7 | NC_005045.1 | + | 15847 | 0.67 | 0.419134 |
Target: 5'- cCGCUGGCggagGCCGagguGCugUgGAUG-CGCCg -3' miRNA: 3'- -GUGACCG----UGGC----CGugAgCUGCuGCGG- -5' |
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22337 | 3' | -58.7 | NC_005045.1 | + | 16367 | 0.67 | 0.437092 |
Target: 5'- aGCUGGCcaagcGCCGGCaggcagccgccaaACguaaagCGGCGAUgGCCg -3' miRNA: 3'- gUGACCG-----UGGCCG-------------UGa-----GCUGCUG-CGG- -5' |
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22337 | 3' | -58.7 | NC_005045.1 | + | 18213 | 0.69 | 0.316769 |
Target: 5'- gGCcGGCAgccaagcuCCGGCACUUGcugcggaucauCGACGCCc -3' miRNA: 3'- gUGaCCGU--------GGCCGUGAGCu----------GCUGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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