miRNA display CGI


Results 21 - 40 of 46 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22337 3' -58.7 NC_005045.1 + 18696 0.68 0.365485
Target:  5'- -cCUGGCcuCCGGCgacgGCUCcagGugGACGCUc -3'
miRNA:   3'- guGACCGu-GGCCG----UGAG---CugCUGCGG- -5'
22337 3' -58.7 NC_005045.1 + 19807 0.7 0.284967
Target:  5'- aCGCUGGUAUaCGGCACcacguucaagggcgUCGugGACcacuGCCu -3'
miRNA:   3'- -GUGACCGUG-GCCGUG--------------AGCugCUG----CGG- -5'
22337 3' -58.7 NC_005045.1 + 20907 0.7 0.266319
Target:  5'- cCACU-GCGauGGCGuCUCGGCGGCGCa -3'
miRNA:   3'- -GUGAcCGUggCCGU-GAGCUGCUGCGg -5'
22337 3' -58.7 NC_005045.1 + 20960 0.69 0.316769
Target:  5'- ---gGGCGCCGGC-CUuugCGugGAcuCGCCa -3'
miRNA:   3'- gugaCCGUGGCCGuGA---GCugCU--GCGG- -5'
22337 3' -58.7 NC_005045.1 + 21045 0.68 0.381954
Target:  5'- uGCUGGUAUuccgcgaUGGCcaguugGC-CGGCGGCGCCu -3'
miRNA:   3'- gUGACCGUG-------GCCG------UGaGCUGCUGCGG- -5'
22337 3' -58.7 NC_005045.1 + 21514 1.12 0.000234
Target:  5'- cCACUGGCACCGGCACUCGACGACGCCg -3'
miRNA:   3'- -GUGACCGUGGCCGUGAGCUGCUGCGG- -5'
22337 3' -58.7 NC_005045.1 + 22442 0.66 0.467313
Target:  5'- aGCuUGGCgaagucGCCGauGUAgucCUCGACGugGCCg -3'
miRNA:   3'- gUG-ACCG------UGGC--CGU---GAGCUGCugCGG- -5'
22337 3' -58.7 NC_005045.1 + 24412 0.68 0.365485
Target:  5'- uCACcGGCACgacggcccuUGGC-CUCGACGuuGCCc -3'
miRNA:   3'- -GUGaCCGUG---------GCCGuGAGCUGCugCGG- -5'
22337 3' -58.7 NC_005045.1 + 25010 0.66 0.467313
Target:  5'- -uCUGGCGCucggacuccuCGGCACUCacguugaaguGACGGC-CCa -3'
miRNA:   3'- guGACCGUG----------GCCGUGAG----------CUGCUGcGG- -5'
22337 3' -58.7 NC_005045.1 + 25125 0.67 0.409863
Target:  5'- aACUgaagGGUAUCGGCGCcuUCGACaucaccgcguGAUGCCa -3'
miRNA:   3'- gUGA----CCGUGGCCGUG--AGCUG----------CUGCGG- -5'
22337 3' -58.7 NC_005045.1 + 25939 0.69 0.301654
Target:  5'- aGCUGGC-CCGGCaggcGCUCGAagGGCaCCu -3'
miRNA:   3'- gUGACCGuGGCCG----UGAGCUg-CUGcGG- -5'
22337 3' -58.7 NC_005045.1 + 26430 0.66 0.487371
Target:  5'- uGCUGGCGuuguCCGGCGuCaCGuaaGugGCCg -3'
miRNA:   3'- gUGACCGU----GGCCGU-GaGCug-CugCGG- -5'
22337 3' -58.7 NC_005045.1 + 26574 0.67 0.391712
Target:  5'- gACgGGUACaucGCAUUCcguGGCGACGCCg -3'
miRNA:   3'- gUGaCCGUGgc-CGUGAG---CUGCUGCGG- -5'
22337 3' -58.7 NC_005045.1 + 26862 0.67 0.409863
Target:  5'- cCACUGGC-CCuGCGCUgGgAUGAgGCUa -3'
miRNA:   3'- -GUGACCGuGGcCGUGAgC-UGCUgCGG- -5'
22337 3' -58.7 NC_005045.1 + 31033 0.69 0.332447
Target:  5'- -gUUGGCACC-GUACUCGGCGcccCGCa -3'
miRNA:   3'- guGACCGUGGcCGUGAGCUGCu--GCGg -5'
22337 3' -58.7 NC_005045.1 + 31513 0.67 0.409863
Target:  5'- ---gGGCGCCauGCGCUUGAUGaAUGCCu -3'
miRNA:   3'- gugaCCGUGGc-CGUGAGCUGC-UGCGG- -5'
22337 3' -58.7 NC_005045.1 + 31869 0.67 0.409863
Target:  5'- aCGCUGGgACCuaugggguccaGGCGCUCcaGGCGGCagguauccaGCCg -3'
miRNA:   3'- -GUGACCgUGG-----------CCGUGAG--CUGCUG---------CGG- -5'
22337 3' -58.7 NC_005045.1 + 32124 0.71 0.240523
Target:  5'- uGCUGGCA-UGGCuGCUgcUGGCGGCGCUg -3'
miRNA:   3'- gUGACCGUgGCCG-UGA--GCUGCUGCGG- -5'
22337 3' -58.7 NC_005045.1 + 35442 0.69 0.332447
Target:  5'- aGCcGcCACCGGCGauaUCGucaGCGGCGCCg -3'
miRNA:   3'- gUGaCcGUGGCCGUg--AGC---UGCUGCGG- -5'
22337 3' -58.7 NC_005045.1 + 35923 0.68 0.374092
Target:  5'- uCGCcuGCACaggaaGCACUCGACGcCGCCa -3'
miRNA:   3'- -GUGacCGUGgc---CGUGAGCUGCuGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.