Results 21 - 40 of 46 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22337 | 3' | -58.7 | NC_005045.1 | + | 18696 | 0.68 | 0.365485 |
Target: 5'- -cCUGGCcuCCGGCgacgGCUCcagGugGACGCUc -3' miRNA: 3'- guGACCGu-GGCCG----UGAG---CugCUGCGG- -5' |
|||||||
22337 | 3' | -58.7 | NC_005045.1 | + | 24412 | 0.68 | 0.365485 |
Target: 5'- uCACcGGCACgacggcccuUGGC-CUCGACGuuGCCc -3' miRNA: 3'- -GUGaCCGUG---------GCCGuGAGCUGCugCGG- -5' |
|||||||
22337 | 3' | -58.7 | NC_005045.1 | + | 35923 | 0.68 | 0.374092 |
Target: 5'- uCGCcuGCACaggaaGCACUCGACGcCGCCa -3' miRNA: 3'- -GUGacCGUGgc---CGUGAGCUGCuGCGG- -5' |
|||||||
22337 | 3' | -58.7 | NC_005045.1 | + | 21045 | 0.68 | 0.381954 |
Target: 5'- uGCUGGUAUuccgcgaUGGCcaguugGC-CGGCGGCGCCu -3' miRNA: 3'- gUGACCGUG-------GCCG------UGaGCUGCUGCGG- -5' |
|||||||
22337 | 3' | -58.7 | NC_005045.1 | + | 255 | 0.68 | 0.382834 |
Target: 5'- gGCUGGCGCUGGUagcccAC-CGcAgGGCGCUg -3' miRNA: 3'- gUGACCGUGGCCG-----UGaGC-UgCUGCGG- -5' |
|||||||
22337 | 3' | -58.7 | NC_005045.1 | + | 42318 | 0.68 | 0.382834 |
Target: 5'- gGCUGGCGCUGGUagcccAC-CGcAgGGCGCUg -3' miRNA: 3'- gUGACCGUGGCCG-----UGaGC-UgCUGCGG- -5' |
|||||||
22337 | 3' | -58.7 | NC_005045.1 | + | 26574 | 0.67 | 0.391712 |
Target: 5'- gACgGGUACaucGCAUUCcguGGCGACGCCg -3' miRNA: 3'- gUGaCCGUGgc-CGUGAG---CUGCUGCGG- -5' |
|||||||
22337 | 3' | -58.7 | NC_005045.1 | + | 13289 | 0.67 | 0.391712 |
Target: 5'- gUACUGGCGCCaguugccauccGGCcccauCUCGcugaaGGCGCCu -3' miRNA: 3'- -GUGACCGUGG-----------CCGu----GAGCug---CUGCGG- -5' |
|||||||
22337 | 3' | -58.7 | NC_005045.1 | + | 13233 | 0.67 | 0.399815 |
Target: 5'- aACUGGCGCCaGUAC-CGcCGgggauucuggcaaGCGCCg -3' miRNA: 3'- gUGACCGUGGcCGUGaGCuGC-------------UGCGG- -5' |
|||||||
22337 | 3' | -58.7 | NC_005045.1 | + | 31513 | 0.67 | 0.409863 |
Target: 5'- ---gGGCGCCauGCGCUUGAUGaAUGCCu -3' miRNA: 3'- gugaCCGUGGc-CGUGAGCUGC-UGCGG- -5' |
|||||||
22337 | 3' | -58.7 | NC_005045.1 | + | 26862 | 0.67 | 0.409863 |
Target: 5'- cCACUGGC-CCuGCGCUgGgAUGAgGCUa -3' miRNA: 3'- -GUGACCGuGGcCGUGAgC-UGCUgCGG- -5' |
|||||||
22337 | 3' | -58.7 | NC_005045.1 | + | 25125 | 0.67 | 0.409863 |
Target: 5'- aACUgaagGGUAUCGGCGCcuUCGACaucaccgcguGAUGCCa -3' miRNA: 3'- gUGA----CCGUGGCCGUG--AGCUG----------CUGCGG- -5' |
|||||||
22337 | 3' | -58.7 | NC_005045.1 | + | 31869 | 0.67 | 0.409863 |
Target: 5'- aCGCUGGgACCuaugggguccaGGCGCUCcaGGCGGCagguauccaGCCg -3' miRNA: 3'- -GUGACCgUGG-----------CCGUGAG--CUGCUG---------CGG- -5' |
|||||||
22337 | 3' | -58.7 | NC_005045.1 | + | 37299 | 0.67 | 0.409863 |
Target: 5'- cCugUGGCugaguUUGGCACUCG-CGGCaGUCu -3' miRNA: 3'- -GugACCGu----GGCCGUGAGCuGCUG-CGG- -5' |
|||||||
22337 | 3' | -58.7 | NC_005045.1 | + | 15847 | 0.67 | 0.419134 |
Target: 5'- cCGCUGGCggagGCCGagguGCugUgGAUG-CGCCg -3' miRNA: 3'- -GUGACCG----UGGC----CGugAgCUGCuGCGG- -5' |
|||||||
22337 | 3' | -58.7 | NC_005045.1 | + | 5901 | 0.67 | 0.428529 |
Target: 5'- aGCUGGCgguaaACCGuGCcCUgCG-CGAUGCCg -3' miRNA: 3'- gUGACCG-----UGGC-CGuGA-GCuGCUGCGG- -5' |
|||||||
22337 | 3' | -58.7 | NC_005045.1 | + | 16367 | 0.67 | 0.437092 |
Target: 5'- aGCUGGCcaagcGCCGGCaggcagccgccaaACguaaagCGGCGAUgGCCg -3' miRNA: 3'- gUGACCG-----UGGCCG-------------UGa-----GCUGCUG-CGG- -5' |
|||||||
22337 | 3' | -58.7 | NC_005045.1 | + | 12411 | 0.67 | 0.438049 |
Target: 5'- -cCUGGCGgauggaucgcCCGuguucaGCACcagCGGCGACGCCc -3' miRNA: 3'- guGACCGU----------GGC------CGUGa--GCUGCUGCGG- -5' |
|||||||
22337 | 3' | -58.7 | NC_005045.1 | + | 4958 | 0.66 | 0.447688 |
Target: 5'- gACaGcGCACCGGCcaagcuGCUgGACGugaagccaGCGCCa -3' miRNA: 3'- gUGaC-CGUGGCCG------UGAgCUGC--------UGCGG- -5' |
|||||||
22337 | 3' | -58.7 | NC_005045.1 | + | 40402 | 0.66 | 0.457444 |
Target: 5'- -uCUGuGCugCGGUACUCaccgcgcucuauGugGGCGCa -3' miRNA: 3'- guGAC-CGugGCCGUGAG------------CugCUGCGg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home