miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22337 3' -58.7 NC_005045.1 + 21514 1.12 0.000234
Target:  5'- cCACUGGCACCGGCACUCGACGACGCCg -3'
miRNA:   3'- -GUGACCGUGGCCGUGAGCUGCUGCGG- -5'
22337 3' -58.7 NC_005045.1 + 11590 0.77 0.093085
Target:  5'- gACgUGGCuguacCCGGCACUCGACGA-GCUg -3'
miRNA:   3'- gUG-ACCGu----GGCCGUGAGCUGCUgCGG- -5'
22337 3' -58.7 NC_005045.1 + 7030 0.74 0.15751
Target:  5'- aUACUcGGCACCaGCcaGCUCGGCGGC-CCg -3'
miRNA:   3'- -GUGA-CCGUGGcCG--UGAGCUGCUGcGG- -5'
22337 3' -58.7 NC_005045.1 + 8465 0.73 0.170803
Target:  5'- aGCU-GCGCCGGCugagCGACGAgGCCc -3'
miRNA:   3'- gUGAcCGUGGCCGuga-GCUGCUgCGG- -5'
22337 3' -58.7 NC_005045.1 + 10695 0.72 0.211246
Target:  5'- aGCUGGaagaugguuCCGGCAC-CGugGcCGCCa -3'
miRNA:   3'- gUGACCgu-------GGCCGUGaGCugCuGCGG- -5'
22337 3' -58.7 NC_005045.1 + 36399 0.71 0.228425
Target:  5'- gCACcGGCuuggGCCGGCgaaUCuGCGACGCCa -3'
miRNA:   3'- -GUGaCCG----UGGCCGug-AGcUGCUGCGG- -5'
22337 3' -58.7 NC_005045.1 + 32124 0.71 0.240523
Target:  5'- uGCUGGCA-UGGCuGCUgcUGGCGGCGCUg -3'
miRNA:   3'- gUGACCGUgGCCG-UGA--GCUGCUGCGG- -5'
22337 3' -58.7 NC_005045.1 + 20907 0.7 0.266319
Target:  5'- cCACU-GCGauGGCGuCUCGGCGGCGCa -3'
miRNA:   3'- -GUGAcCGUggCCGU-GAGCUGCUGCGg -5'
22337 3' -58.7 NC_005045.1 + 9548 0.7 0.273108
Target:  5'- uCGCgagGGaaccCACCGGC-CagGGCGACGCCc -3'
miRNA:   3'- -GUGa--CC----GUGGCCGuGagCUGCUGCGG- -5'
22337 3' -58.7 NC_005045.1 + 39276 0.7 0.280035
Target:  5'- ---cGcGCACCGGCAagggcCUCGACGGCaCCc -3'
miRNA:   3'- gugaC-CGUGGCCGU-----GAGCUGCUGcGG- -5'
22337 3' -58.7 NC_005045.1 + 19807 0.7 0.284967
Target:  5'- aCGCUGGUAUaCGGCACcacguucaagggcgUCGugGACcacuGCCu -3'
miRNA:   3'- -GUGACCGUG-GCCGUG--------------AGCugCUG----CGG- -5'
22337 3' -58.7 NC_005045.1 + 25939 0.69 0.301654
Target:  5'- aGCUGGC-CCGGCaggcGCUCGAagGGCaCCu -3'
miRNA:   3'- gUGACCGuGGCCG----UGAGCUg-CUGcGG- -5'
22337 3' -58.7 NC_005045.1 + 18213 0.69 0.316769
Target:  5'- gGCcGGCAgccaagcuCCGGCACUUGcugcggaucauCGACGCCc -3'
miRNA:   3'- gUGaCCGU--------GGCCGUGAGCu----------GCUGCGG- -5'
22337 3' -58.7 NC_005045.1 + 20960 0.69 0.316769
Target:  5'- ---gGGCGCCGGC-CUuugCGugGAcuCGCCa -3'
miRNA:   3'- gugaCCGUGGCCGuGA---GCugCU--GCGG- -5'
22337 3' -58.7 NC_005045.1 + 2655 0.69 0.324537
Target:  5'- aGCUGuacCACgGGCugUUGGUGGCGCCg -3'
miRNA:   3'- gUGACc--GUGgCCGugAGCUGCUGCGG- -5'
22337 3' -58.7 NC_005045.1 + 5057 0.69 0.324537
Target:  5'- gACUGGa--CGGCGCg-GAUGGCGCUg -3'
miRNA:   3'- gUGACCgugGCCGUGagCUGCUGCGG- -5'
22337 3' -58.7 NC_005045.1 + 2952 0.69 0.331649
Target:  5'- ---gGGCGCCGGCgugaccgugaaccGCUaCGACGAgGCg -3'
miRNA:   3'- gugaCCGUGGCCG-------------UGA-GCUGCUgCGg -5'
22337 3' -58.7 NC_005045.1 + 31033 0.69 0.332447
Target:  5'- -gUUGGCACC-GUACUCGGCGcccCGCa -3'
miRNA:   3'- guGACCGUGGcCGUGAGCUGCu--GCGg -5'
22337 3' -58.7 NC_005045.1 + 4882 0.69 0.332447
Target:  5'- gGCUGG-ACaGGCGCUCGGCGGuuUGCa -3'
miRNA:   3'- gUGACCgUGgCCGUGAGCUGCU--GCGg -5'
22337 3' -58.7 NC_005045.1 + 35442 0.69 0.332447
Target:  5'- aGCcGcCACCGGCGauaUCGucaGCGGCGCCg -3'
miRNA:   3'- gUGaCcGUGGCCGUg--AGC---UGCUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.