Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22337 | 3' | -58.7 | NC_005045.1 | + | 39276 | 0.7 | 0.280035 |
Target: 5'- ---cGcGCACCGGCAagggcCUCGACGGCaCCc -3' miRNA: 3'- gugaC-CGUGGCCGU-----GAGCUGCUGcGG- -5' |
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22337 | 3' | -58.7 | NC_005045.1 | + | 19807 | 0.7 | 0.284967 |
Target: 5'- aCGCUGGUAUaCGGCACcacguucaagggcgUCGugGACcacuGCCu -3' miRNA: 3'- -GUGACCGUG-GCCGUG--------------AGCugCUG----CGG- -5' |
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22337 | 3' | -58.7 | NC_005045.1 | + | 18213 | 0.69 | 0.316769 |
Target: 5'- gGCcGGCAgccaagcuCCGGCACUUGcugcggaucauCGACGCCc -3' miRNA: 3'- gUGaCCGU--------GGCCGUGAGCu----------GCUGCGG- -5' |
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22337 | 3' | -58.7 | NC_005045.1 | + | 2952 | 0.69 | 0.331649 |
Target: 5'- ---gGGCGCCGGCgugaccgugaaccGCUaCGACGAgGCg -3' miRNA: 3'- gugaCCGUGGCCG-------------UGA-GCUGCUgCGg -5' |
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22337 | 3' | -58.7 | NC_005045.1 | + | 35442 | 0.69 | 0.332447 |
Target: 5'- aGCcGcCACCGGCGauaUCGucaGCGGCGCCg -3' miRNA: 3'- gUGaCcGUGGCCGUg--AGC---UGCUGCGG- -5' |
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22337 | 3' | -58.7 | NC_005045.1 | + | 35923 | 0.68 | 0.374092 |
Target: 5'- uCGCcuGCACaggaaGCACUCGACGcCGCCa -3' miRNA: 3'- -GUGacCGUGgc---CGUGAGCUGCuGCGG- -5' |
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22337 | 3' | -58.7 | NC_005045.1 | + | 21045 | 0.68 | 0.381954 |
Target: 5'- uGCUGGUAUuccgcgaUGGCcaguugGC-CGGCGGCGCCu -3' miRNA: 3'- gUGACCGUG-------GCCG------UGaGCUGCUGCGG- -5' |
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22337 | 3' | -58.7 | NC_005045.1 | + | 31033 | 0.69 | 0.332447 |
Target: 5'- -gUUGGCACC-GUACUCGGCGcccCGCa -3' miRNA: 3'- guGACCGUGGcCGUGAGCUGCu--GCGg -5' |
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22337 | 3' | -58.7 | NC_005045.1 | + | 4882 | 0.69 | 0.332447 |
Target: 5'- gGCUGG-ACaGGCGCUCGGCGGuuUGCa -3' miRNA: 3'- gUGACCgUGgCCGUGAGCUGCU--GCGg -5' |
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22337 | 3' | -58.7 | NC_005045.1 | + | 24412 | 0.68 | 0.365485 |
Target: 5'- uCACcGGCACgacggcccuUGGC-CUCGACGuuGCCc -3' miRNA: 3'- -GUGaCCGUG---------GCCGuGAGCUGCugCGG- -5' |
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22337 | 3' | -58.7 | NC_005045.1 | + | 18696 | 0.68 | 0.365485 |
Target: 5'- -cCUGGCcuCCGGCgacgGCUCcagGugGACGCUc -3' miRNA: 3'- guGACCGu-GGCCG----UGAG---CugCUGCGG- -5' |
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22337 | 3' | -58.7 | NC_005045.1 | + | 42318 | 0.68 | 0.382834 |
Target: 5'- gGCUGGCGCUGGUagcccAC-CGcAgGGCGCUg -3' miRNA: 3'- gUGACCGUGGCCG-----UGaGC-UgCUGCGG- -5' |
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22337 | 3' | -58.7 | NC_005045.1 | + | 2655 | 0.69 | 0.324537 |
Target: 5'- aGCUGuacCACgGGCugUUGGUGGCGCCg -3' miRNA: 3'- gUGACc--GUGgCCGugAGCUGCUGCGG- -5' |
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22337 | 3' | -58.7 | NC_005045.1 | + | 5057 | 0.69 | 0.324537 |
Target: 5'- gACUGGa--CGGCGCg-GAUGGCGCUg -3' miRNA: 3'- gUGACCgugGCCGUGagCUGCUGCGG- -5' |
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22337 | 3' | -58.7 | NC_005045.1 | + | 20960 | 0.69 | 0.316769 |
Target: 5'- ---gGGCGCCGGC-CUuugCGugGAcuCGCCa -3' miRNA: 3'- gugaCCGUGGCCGuGA---GCugCU--GCGG- -5' |
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22337 | 3' | -58.7 | NC_005045.1 | + | 25939 | 0.69 | 0.301654 |
Target: 5'- aGCUGGC-CCGGCaggcGCUCGAagGGCaCCu -3' miRNA: 3'- gUGACCGuGGCCG----UGAGCUg-CUGcGG- -5' |
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22337 | 3' | -58.7 | NC_005045.1 | + | 9548 | 0.7 | 0.273108 |
Target: 5'- uCGCgagGGaaccCACCGGC-CagGGCGACGCCc -3' miRNA: 3'- -GUGa--CC----GUGGCCGuGagCUGCUGCGG- -5' |
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22337 | 3' | -58.7 | NC_005045.1 | + | 20907 | 0.7 | 0.266319 |
Target: 5'- cCACU-GCGauGGCGuCUCGGCGGCGCa -3' miRNA: 3'- -GUGAcCGUggCCGU-GAGCUGCUGCGg -5' |
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22337 | 3' | -58.7 | NC_005045.1 | + | 36399 | 0.71 | 0.228425 |
Target: 5'- gCACcGGCuuggGCCGGCgaaUCuGCGACGCCa -3' miRNA: 3'- -GUGaCCG----UGGCCGug-AGcUGCUGCGG- -5' |
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22337 | 3' | -58.7 | NC_005045.1 | + | 26430 | 0.66 | 0.487371 |
Target: 5'- uGCUGGCGuuguCCGGCGuCaCGuaaGugGCCg -3' miRNA: 3'- gUGACCGU----GGCCGU-GaGCug-CugCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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