miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22337 3' -58.7 NC_005045.1 + 42318 0.68 0.382834
Target:  5'- gGCUGGCGCUGGUagcccAC-CGcAgGGCGCUg -3'
miRNA:   3'- gUGACCGUGGCCG-----UGaGC-UgCUGCGG- -5'
22337 3' -58.7 NC_005045.1 + 40402 0.66 0.457444
Target:  5'- -uCUGuGCugCGGUACUCaccgcgcucuauGugGGCGCa -3'
miRNA:   3'- guGAC-CGugGCCGUGAG------------CugCUGCGg -5'
22337 3' -58.7 NC_005045.1 + 39399 0.66 0.47729
Target:  5'- uGCUGGaCACCaGC-CUCGcCGACGa- -3'
miRNA:   3'- gUGACC-GUGGcCGuGAGCuGCUGCgg -5'
22337 3' -58.7 NC_005045.1 + 39276 0.7 0.280035
Target:  5'- ---cGcGCACCGGCAagggcCUCGACGGCaCCc -3'
miRNA:   3'- gugaC-CGUGGCCGU-----GAGCUGCUGcGG- -5'
22337 3' -58.7 NC_005045.1 + 37299 0.67 0.409863
Target:  5'- cCugUGGCugaguUUGGCACUCG-CGGCaGUCu -3'
miRNA:   3'- -GugACCGu----GGCCGUGAGCuGCUG-CGG- -5'
22337 3' -58.7 NC_005045.1 + 36399 0.71 0.228425
Target:  5'- gCACcGGCuuggGCCGGCgaaUCuGCGACGCCa -3'
miRNA:   3'- -GUGaCCG----UGGCCGug-AGcUGCUGCGG- -5'
22337 3' -58.7 NC_005045.1 + 35923 0.68 0.374092
Target:  5'- uCGCcuGCACaggaaGCACUCGACGcCGCCa -3'
miRNA:   3'- -GUGacCGUGgc---CGUGAGCUGCuGCGG- -5'
22337 3' -58.7 NC_005045.1 + 35442 0.69 0.332447
Target:  5'- aGCcGcCACCGGCGauaUCGucaGCGGCGCCg -3'
miRNA:   3'- gUGaCcGUGGCCGUg--AGC---UGCUGCGG- -5'
22337 3' -58.7 NC_005045.1 + 32124 0.71 0.240523
Target:  5'- uGCUGGCA-UGGCuGCUgcUGGCGGCGCUg -3'
miRNA:   3'- gUGACCGUgGCCG-UGA--GCUGCUGCGG- -5'
22337 3' -58.7 NC_005045.1 + 31869 0.67 0.409863
Target:  5'- aCGCUGGgACCuaugggguccaGGCGCUCcaGGCGGCagguauccaGCCg -3'
miRNA:   3'- -GUGACCgUGG-----------CCGUGAG--CUGCUG---------CGG- -5'
22337 3' -58.7 NC_005045.1 + 31513 0.67 0.409863
Target:  5'- ---gGGCGCCauGCGCUUGAUGaAUGCCu -3'
miRNA:   3'- gugaCCGUGGc-CGUGAGCUGC-UGCGG- -5'
22337 3' -58.7 NC_005045.1 + 31033 0.69 0.332447
Target:  5'- -gUUGGCACC-GUACUCGGCGcccCGCa -3'
miRNA:   3'- guGACCGUGGcCGUGAGCUGCu--GCGg -5'
22337 3' -58.7 NC_005045.1 + 26862 0.67 0.409863
Target:  5'- cCACUGGC-CCuGCGCUgGgAUGAgGCUa -3'
miRNA:   3'- -GUGACCGuGGcCGUGAgC-UGCUgCGG- -5'
22337 3' -58.7 NC_005045.1 + 26574 0.67 0.391712
Target:  5'- gACgGGUACaucGCAUUCcguGGCGACGCCg -3'
miRNA:   3'- gUGaCCGUGgc-CGUGAG---CUGCUGCGG- -5'
22337 3' -58.7 NC_005045.1 + 26430 0.66 0.487371
Target:  5'- uGCUGGCGuuguCCGGCGuCaCGuaaGugGCCg -3'
miRNA:   3'- gUGACCGU----GGCCGU-GaGCug-CugCGG- -5'
22337 3' -58.7 NC_005045.1 + 25939 0.69 0.301654
Target:  5'- aGCUGGC-CCGGCaggcGCUCGAagGGCaCCu -3'
miRNA:   3'- gUGACCGuGGCCG----UGAGCUg-CUGcGG- -5'
22337 3' -58.7 NC_005045.1 + 25125 0.67 0.409863
Target:  5'- aACUgaagGGUAUCGGCGCcuUCGACaucaccgcguGAUGCCa -3'
miRNA:   3'- gUGA----CCGUGGCCGUG--AGCUG----------CUGCGG- -5'
22337 3' -58.7 NC_005045.1 + 25010 0.66 0.467313
Target:  5'- -uCUGGCGCucggacuccuCGGCACUCacguugaaguGACGGC-CCa -3'
miRNA:   3'- guGACCGUG----------GCCGUGAG----------CUGCUGcGG- -5'
22337 3' -58.7 NC_005045.1 + 24412 0.68 0.365485
Target:  5'- uCACcGGCACgacggcccuUGGC-CUCGACGuuGCCc -3'
miRNA:   3'- -GUGaCCGUG---------GCCGuGAGCUGCugCGG- -5'
22337 3' -58.7 NC_005045.1 + 22442 0.66 0.467313
Target:  5'- aGCuUGGCgaagucGCCGauGUAgucCUCGACGugGCCg -3'
miRNA:   3'- gUG-ACCG------UGGC--CGU---GAGCUGCugCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.