miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22339 3' -54.1 NC_005045.1 + 26745 0.66 0.728529
Target:  5'- gGCAGCA-AGGCCGGCagguccgccguagcAUUGAGGCu- -3'
miRNA:   3'- -CGUCGUgUUCGGCCGa-------------UAGCUCUGcc -5'
22339 3' -54.1 NC_005045.1 + 26243 0.66 0.724192
Target:  5'- cGUAGaccccaACAAgGCCGGCUgguuguacAUCaAGGCGGg -3'
miRNA:   3'- -CGUCg-----UGUU-CGGCCGA--------UAGcUCUGCC- -5'
22339 3' -54.1 NC_005045.1 + 18265 0.66 0.724192
Target:  5'- cGCAGUcauggcgcuGCGGGCUgGGCUGUCGAuGCu- -3'
miRNA:   3'- -CGUCG---------UGUUCGG-CCGAUAGCUcUGcc -5'
22339 3' -54.1 NC_005045.1 + 5021 0.66 0.724192
Target:  5'- aGCAGCuu-GGCCGGUgcgcUGUCGcugaaGCGGa -3'
miRNA:   3'- -CGUCGuguUCGGCCG----AUAGCuc---UGCC- -5'
22339 3' -54.1 NC_005045.1 + 21939 0.66 0.723106
Target:  5'- aGCAGuCACuucGGuaaugucugugucCCGGCUGUCGGccucgcGGCGGa -3'
miRNA:   3'- -CGUC-GUGu--UC-------------GGCCGAUAGCU------CUGCC- -5'
22339 3' -54.1 NC_005045.1 + 12774 0.66 0.722018
Target:  5'- cGCGGCu---GCCGGCUuccggGUCGuccucguccuucGACGGg -3'
miRNA:   3'- -CGUCGuguuCGGCCGA-----UAGCu-----------CUGCC- -5'
22339 3' -54.1 NC_005045.1 + 5917 0.66 0.702296
Target:  5'- uGCccuGCGCGAuGCCGGaaua-GAGAUGGa -3'
miRNA:   3'- -CGu--CGUGUU-CGGCCgauagCUCUGCC- -5'
22339 3' -54.1 NC_005045.1 + 14820 0.66 0.702296
Target:  5'- gGUAGCAaccuGCCGGCagugcccaacGUCGcGGCGGa -3'
miRNA:   3'- -CGUCGUguu-CGGCCGa---------UAGCuCUGCC- -5'
22339 3' -54.1 NC_005045.1 + 14405 0.66 0.702296
Target:  5'- aCGGaACAGGCCgGGCUugAUCGAGccguCGGc -3'
miRNA:   3'- cGUCgUGUUCGG-CCGA--UAGCUCu---GCC- -5'
22339 3' -54.1 NC_005045.1 + 6962 0.66 0.702296
Target:  5'- gGCcGC-CGAGCUGGCUGgugcCGAGAUc- -3'
miRNA:   3'- -CGuCGuGUUCGGCCGAUa---GCUCUGcc -5'
22339 3' -54.1 NC_005045.1 + 15386 0.66 0.692344
Target:  5'- cGCuGCgGCGGGCCguGGCggacguguacgagCGAGGCGGg -3'
miRNA:   3'- -CGuCG-UGUUCGG--CCGaua----------GCUCUGCC- -5'
22339 3' -54.1 NC_005045.1 + 12442 0.66 0.691235
Target:  5'- aGCGGCGacgcccucaAGGCUcuggagaaacagGGCU-UCGAGGCGGc -3'
miRNA:   3'- -CGUCGUg--------UUCGG------------CCGAuAGCUCUGCC- -5'
22339 3' -54.1 NC_005045.1 + 34455 0.67 0.680115
Target:  5'- cGCGGCACGuuGCCGGUgaaGUCcccgaAGACGc -3'
miRNA:   3'- -CGUCGUGUu-CGGCCGa--UAGc----UCUGCc -5'
22339 3' -54.1 NC_005045.1 + 14940 0.67 0.668946
Target:  5'- uGCGGgAC-AGCCGGUacagcaGGGGCGGc -3'
miRNA:   3'- -CGUCgUGuUCGGCCGauag--CUCUGCC- -5'
22339 3' -54.1 NC_005045.1 + 19584 0.67 0.657742
Target:  5'- cCAGCACuacUCGGCUAUucucCGGGACGa -3'
miRNA:   3'- cGUCGUGuucGGCCGAUA----GCUCUGCc -5'
22339 3' -54.1 NC_005045.1 + 12032 0.67 0.63527
Target:  5'- uGCGGUACAagGGCCGGgUGcCGuacgaAGAUGGc -3'
miRNA:   3'- -CGUCGUGU--UCGGCCgAUaGC-----UCUGCC- -5'
22339 3' -54.1 NC_005045.1 + 13014 0.67 0.63527
Target:  5'- uCGGCGCAGuaCGGCg--CGAGuGCGGc -3'
miRNA:   3'- cGUCGUGUUcgGCCGauaGCUC-UGCC- -5'
22339 3' -54.1 NC_005045.1 + 3076 0.68 0.612786
Target:  5'- aGCAGCACGucgaAGCCuucGgaGUCGAGAucaCGGc -3'
miRNA:   3'- -CGUCGUGU----UCGGc--CgaUAGCUCU---GCC- -5'
22339 3' -54.1 NC_005045.1 + 26056 0.68 0.56478
Target:  5'- cGCAGCACcguGgCGaGCUGUaccuguucgacgagCGGGACGGu -3'
miRNA:   3'- -CGUCGUGuu-CgGC-CGAUA--------------GCUCUGCC- -5'
22339 3' -54.1 NC_005045.1 + 21644 0.69 0.557047
Target:  5'- gGCAGCguggaGC-AGCgGGCUAUCGAGuuCGc -3'
miRNA:   3'- -CGUCG-----UGuUCGgCCGAUAGCUCu-GCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.