Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22339 | 3' | -54.1 | NC_005045.1 | + | 41296 | 0.74 | 0.285051 |
Target: 5'- aCAGCAC-AGCgGGCgc-CGGGGCGGu -3' miRNA: 3'- cGUCGUGuUCGgCCGauaGCUCUGCC- -5' |
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22339 | 3' | -54.1 | NC_005045.1 | + | 12774 | 0.66 | 0.722018 |
Target: 5'- cGCGGCu---GCCGGCUuccggGUCGuccucguccuucGACGGg -3' miRNA: 3'- -CGUCGuguuCGGCCGA-----UAGCu-----------CUGCC- -5' |
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22339 | 3' | -54.1 | NC_005045.1 | + | 14940 | 0.67 | 0.668946 |
Target: 5'- uGCGGgAC-AGCCGGUacagcaGGGGCGGc -3' miRNA: 3'- -CGUCgUGuUCGGCCGauag--CUCUGCC- -5' |
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22339 | 3' | -54.1 | NC_005045.1 | + | 3076 | 0.68 | 0.612786 |
Target: 5'- aGCAGCACGucgaAGCCuucGgaGUCGAGAucaCGGc -3' miRNA: 3'- -CGUCGUGU----UCGGc--CgaUAGCUCU---GCC- -5' |
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22339 | 3' | -54.1 | NC_005045.1 | + | 9883 | 0.69 | 0.513522 |
Target: 5'- -aGGCGCGGGCCGcCU-UCGGGGuCGGg -3' miRNA: 3'- cgUCGUGUUCGGCcGAuAGCUCU-GCC- -5' |
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22339 | 3' | -54.1 | NC_005045.1 | + | 23486 | 0.7 | 0.49228 |
Target: 5'- cGCAGCcgGCGgagcuaccggGGCCGGCUGagCGGGugcuuGCGGa -3' miRNA: 3'- -CGUCG--UGU----------UCGGCCGAUa-GCUC-----UGCC- -5' |
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22339 | 3' | -54.1 | NC_005045.1 | + | 5021 | 0.66 | 0.724192 |
Target: 5'- aGCAGCuu-GGCCGGUgcgcUGUCGcugaaGCGGa -3' miRNA: 3'- -CGUCGuguUCGGCCG----AUAGCuc---UGCC- -5' |
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22339 | 3' | -54.1 | NC_005045.1 | + | 14405 | 0.66 | 0.702296 |
Target: 5'- aCGGaACAGGCCgGGCUugAUCGAGccguCGGc -3' miRNA: 3'- cGUCgUGUUCGG-CCGA--UAGCUCu---GCC- -5' |
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22339 | 3' | -54.1 | NC_005045.1 | + | 5901 | 0.69 | 0.557047 |
Target: 5'- gGCGGacaGCGGGCCGGCcuucuUCGAuaccaGCGGg -3' miRNA: 3'- -CGUCg--UGUUCGGCCGau---AGCUc----UGCC- -5' |
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22339 | 3' | -54.1 | NC_005045.1 | + | 30097 | 0.71 | 0.431202 |
Target: 5'- -aGGCGCAGGCCGaGCUGcguacccugcaCGAGGCGa -3' miRNA: 3'- cgUCGUGUUCGGC-CGAUa----------GCUCUGCc -5' |
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22339 | 3' | -54.1 | NC_005045.1 | + | 40454 | 0.74 | 0.285051 |
Target: 5'- cGCAGCACAgaGGCUGGCgaucUCGuaGGGCGa -3' miRNA: 3'- -CGUCGUGU--UCGGCCGau--AGC--UCUGCc -5' |
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22339 | 3' | -54.1 | NC_005045.1 | + | 26745 | 0.66 | 0.728529 |
Target: 5'- gGCAGCA-AGGCCGGCagguccgccguagcAUUGAGGCu- -3' miRNA: 3'- -CGUCGUgUUCGGCCGa-------------UAGCUCUGcc -5' |
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22339 | 3' | -54.1 | NC_005045.1 | + | 41249 | 0.72 | 0.374793 |
Target: 5'- aGCAgGCACAGGCCGGUcagcccaCG-GGCGGu -3' miRNA: 3'- -CGU-CGUGUUCGGCCGaua----GCuCUGCC- -5' |
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22339 | 3' | -54.1 | NC_005045.1 | + | 34455 | 0.67 | 0.680115 |
Target: 5'- cGCGGCACGuuGCCGGUgaaGUCcccgaAGACGc -3' miRNA: 3'- -CGUCGUGUu-CGGCCGa--UAGc----UCUGCc -5' |
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22339 | 3' | -54.1 | NC_005045.1 | + | 21939 | 0.66 | 0.723106 |
Target: 5'- aGCAGuCACuucGGuaaugucugugucCCGGCUGUCGGccucgcGGCGGa -3' miRNA: 3'- -CGUC-GUGu--UC-------------GGCCGAUAGCU------CUGCC- -5' |
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22339 | 3' | -54.1 | NC_005045.1 | + | 12032 | 0.67 | 0.63527 |
Target: 5'- uGCGGUACAagGGCCGGgUGcCGuacgaAGAUGGc -3' miRNA: 3'- -CGUCGUGU--UCGGCCgAUaGC-----UCUGCC- -5' |
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22339 | 3' | -54.1 | NC_005045.1 | + | 26056 | 0.68 | 0.56478 |
Target: 5'- cGCAGCACcguGgCGaGCUGUaccuguucgacgagCGGGACGGu -3' miRNA: 3'- -CGUCGUGuu-CgGC-CGAUA--------------GCUCUGCC- -5' |
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22339 | 3' | -54.1 | NC_005045.1 | + | 21644 | 0.69 | 0.557047 |
Target: 5'- gGCAGCguggaGC-AGCgGGCUAUCGAGuuCGc -3' miRNA: 3'- -CGUCG-----UGuUCGgCCGAUAGCUCu-GCc -5' |
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22339 | 3' | -54.1 | NC_005045.1 | + | 10465 | 0.69 | 0.557047 |
Target: 5'- aGCcGCACAAuccuGCCGuuCUAUgGAGGCGGu -3' miRNA: 3'- -CGuCGUGUU----CGGCc-GAUAgCUCUGCC- -5' |
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22339 | 3' | -54.1 | NC_005045.1 | + | 26531 | 0.71 | 0.431202 |
Target: 5'- cGCGGCAaccauAGCCGGCUAccucaaccaaCGGGGCGu -3' miRNA: 3'- -CGUCGUgu---UCGGCCGAUa---------GCUCUGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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