Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22342 | 3' | -53.5 | NC_005045.1 | + | 37004 | 0.66 | 0.783647 |
Target: 5'- uGGCGagaaagugCAuACUGGCACGgGGACCu -3' miRNA: 3'- gCCGCagaa----GU-UGGUUGUGCgCCUGG- -5' |
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22342 | 3' | -53.5 | NC_005045.1 | + | 8986 | 0.66 | 0.783647 |
Target: 5'- uGGCccacGUCaagggUGGCCAGCGCaaGGACCa -3' miRNA: 3'- gCCG----CAGaa---GUUGGUUGUGcgCCUGG- -5' |
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22342 | 3' | -53.5 | NC_005045.1 | + | 40818 | 0.66 | 0.773471 |
Target: 5'- -aGCG-CUUCAACCAAggcCGCGCcacugaGGGCUg -3' miRNA: 3'- gcCGCaGAAGUUGGUU---GUGCG------CCUGG- -5' |
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22342 | 3' | -53.5 | NC_005045.1 | + | 5456 | 0.66 | 0.773471 |
Target: 5'- gCGGCGcUCUUguGCCu---CGUGGGCa -3' miRNA: 3'- -GCCGC-AGAAguUGGuuguGCGCCUGg -5' |
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22342 | 3' | -53.5 | NC_005045.1 | + | 24431 | 0.66 | 0.773471 |
Target: 5'- uCGGCuGcgcuccagcUCUUC-ACCGGCACGaCGGcCCu -3' miRNA: 3'- -GCCG-C---------AGAAGuUGGUUGUGC-GCCuGG- -5' |
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22342 | 3' | -53.5 | NC_005045.1 | + | 30555 | 0.66 | 0.773471 |
Target: 5'- gCGG-GUCUgcUC-ACCAGCgACaCGGGCCg -3' miRNA: 3'- -GCCgCAGA--AGuUGGUUG-UGcGCCUGG- -5' |
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22342 | 3' | -53.5 | NC_005045.1 | + | 15179 | 0.66 | 0.773471 |
Target: 5'- uGGCug---CGGCCAcUACGCGGACa -3' miRNA: 3'- gCCGcagaaGUUGGUuGUGCGCCUGg -5' |
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22342 | 3' | -53.5 | NC_005045.1 | + | 4401 | 0.66 | 0.763143 |
Target: 5'- uCGGCGUag-CAGCUuggGACAgCaCGGGCCg -3' miRNA: 3'- -GCCGCAgaaGUUGG---UUGU-GcGCCUGG- -5' |
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22342 | 3' | -53.5 | NC_005045.1 | + | 6494 | 0.66 | 0.752676 |
Target: 5'- gCGGCGUgUgccggUAGCCuugugcauuacAugGCGCaGGACCu -3' miRNA: 3'- -GCCGCAgAa----GUUGG-----------UugUGCG-CCUGG- -5' |
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22342 | 3' | -53.5 | NC_005045.1 | + | 23714 | 0.66 | 0.752676 |
Target: 5'- gGGCGUCcu-GACCuaugucGAUGCGCaGACCa -3' miRNA: 3'- gCCGCAGaagUUGG------UUGUGCGcCUGG- -5' |
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22342 | 3' | -53.5 | NC_005045.1 | + | 18206 | 0.66 | 0.751622 |
Target: 5'- gCGGCGgggcCggCAGCCAagcuccgGCACuugcuGCGGAUCa -3' miRNA: 3'- -GCCGCa---GaaGUUGGU-------UGUG-----CGCCUGG- -5' |
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22342 | 3' | -53.5 | NC_005045.1 | + | 32882 | 0.66 | 0.751622 |
Target: 5'- -aGCGUUcaUCAcGCCGACgguagcaGCGUGGACCg -3' miRNA: 3'- gcCGCAGa-AGU-UGGUUG-------UGCGCCUGG- -5' |
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22342 | 3' | -53.5 | NC_005045.1 | + | 33583 | 0.66 | 0.738879 |
Target: 5'- uGGCuGUCcgCGACCAGCucaacgagcaggucACGCGGgagcugcugcGCCg -3' miRNA: 3'- gCCG-CAGaaGUUGGUUG--------------UGCGCC----------UGG- -5' |
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22342 | 3' | -53.5 | NC_005045.1 | + | 13202 | 0.67 | 0.731371 |
Target: 5'- aGGCGcCUUCAG-CGAgAUG-GGGCCg -3' miRNA: 3'- gCCGCaGAAGUUgGUUgUGCgCCUGG- -5' |
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22342 | 3' | -53.5 | NC_005045.1 | + | 16008 | 0.67 | 0.731371 |
Target: 5'- aGGCGUCcagcUCGAUgAuccACugGCGGaagGCCg -3' miRNA: 3'- gCCGCAGa---AGUUGgU---UGugCGCC---UGG- -5' |
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22342 | 3' | -53.5 | NC_005045.1 | + | 33249 | 0.67 | 0.720558 |
Target: 5'- uGGCGUCcaugaUCGucucggacgccGCCAGgACGCGGcucaggGCCg -3' miRNA: 3'- gCCGCAGa----AGU-----------UGGUUgUGCGCC------UGG- -5' |
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22342 | 3' | -53.5 | NC_005045.1 | + | 2845 | 0.67 | 0.69867 |
Target: 5'- cCGGCGggccgCUgcaacgCAGCCGACAUgGCGcugugcGACCa -3' miRNA: 3'- -GCCGCa----GAa-----GUUGGUUGUG-CGC------CUGG- -5' |
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22342 | 3' | -53.5 | NC_005045.1 | + | 7671 | 0.67 | 0.68762 |
Target: 5'- uCGGCuuaUCUUCccuACCG--ACGCGGGCUg -3' miRNA: 3'- -GCCGc--AGAAGu--UGGUugUGCGCCUGG- -5' |
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22342 | 3' | -53.5 | NC_005045.1 | + | 31272 | 0.67 | 0.68762 |
Target: 5'- uCGGUGUCcUCGGCgAACcacuGCGCGG-CUu -3' miRNA: 3'- -GCCGCAGaAGUUGgUUG----UGCGCCuGG- -5' |
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22342 | 3' | -53.5 | NC_005045.1 | + | 32509 | 0.68 | 0.642981 |
Target: 5'- cCGGUaUC-UCGGCCugcucCACGCGGGCg -3' miRNA: 3'- -GCCGcAGaAGUUGGuu---GUGCGCCUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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