Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22361 | 3' | -54.9 | NC_005045.1 | + | 19488 | 0.66 | 0.718729 |
Target: 5'- cGGAUaguUCUCcGGGCCUuCGgCGAGGg -3' miRNA: 3'- -CCUAgu-GGAGuUCUGGGuGCgGCUCC- -5' |
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22361 | 3' | -54.9 | NC_005045.1 | + | 5609 | 0.66 | 0.707941 |
Target: 5'- gGGGUCACCU-GGGAgCCgguACGCUGAa- -3' miRNA: 3'- -CCUAGUGGAgUUCUgGG---UGCGGCUcc -5' |
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22361 | 3' | -54.9 | NC_005045.1 | + | 23587 | 0.66 | 0.697078 |
Target: 5'- cGGGUCGCCuUCGAGGuuUCC-UGCC-AGGg -3' miRNA: 3'- -CCUAGUGG-AGUUCU--GGGuGCGGcUCC- -5' |
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22361 | 3' | -54.9 | NC_005045.1 | + | 870 | 0.66 | 0.686152 |
Target: 5'- gGGAagGCCcCAGGgagcGCCCugG-CGAGGg -3' miRNA: 3'- -CCUagUGGaGUUC----UGGGugCgGCUCC- -5' |
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22361 | 3' | -54.9 | NC_005045.1 | + | 41838 | 0.66 | 0.685056 |
Target: 5'- cGGAUCAgguUCUCGauGGugCCggcgaagGCGCgGAGGu -3' miRNA: 3'- -CCUAGU---GGAGU--UCugGG-------UGCGgCUCC- -5' |
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22361 | 3' | -54.9 | NC_005045.1 | + | 37043 | 0.66 | 0.675173 |
Target: 5'- aGGuUC-CUUcCAAGGccaguCCCugGCCGAGGu -3' miRNA: 3'- -CCuAGuGGA-GUUCU-----GGGugCGGCUCC- -5' |
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22361 | 3' | -54.9 | NC_005045.1 | + | 1686 | 0.67 | 0.664153 |
Target: 5'- -uGUC-CCUUGAGGCCCuucCaCCGAGGg -3' miRNA: 3'- ccUAGuGGAGUUCUGGGu--GcGGCUCC- -5' |
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22361 | 3' | -54.9 | NC_005045.1 | + | 25966 | 0.67 | 0.664153 |
Target: 5'- uGGccCACCUgcugcauacCGAccaGCCCugGCCGAGGc -3' miRNA: 3'- -CCuaGUGGA---------GUUc--UGGGugCGGCUCC- -5' |
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22361 | 3' | -54.9 | NC_005045.1 | + | 41119 | 0.67 | 0.664153 |
Target: 5'- aGGUCGCUgcCAGGACCaacacccaGCGCCagGAGGu -3' miRNA: 3'- cCUAGUGGa-GUUCUGGg-------UGCGG--CUCC- -5' |
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22361 | 3' | -54.9 | NC_005045.1 | + | 29752 | 0.67 | 0.653102 |
Target: 5'- cGGGUgGCCaacggugccaUCAcAGACCU-CGCUGAGGu -3' miRNA: 3'- -CCUAgUGG----------AGU-UCUGGGuGCGGCUCC- -5' |
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22361 | 3' | -54.9 | NC_005045.1 | + | 20381 | 0.67 | 0.649783 |
Target: 5'- ---aCAgCUCGGGguggaagcuaccccGCCC-CGCCGAGGa -3' miRNA: 3'- ccuaGUgGAGUUC--------------UGGGuGCGGCUCC- -5' |
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22361 | 3' | -54.9 | NC_005045.1 | + | 8603 | 0.67 | 0.642032 |
Target: 5'- cGGcgUACaugaAGGGCcuCCACGCCGGGGc -3' miRNA: 3'- -CCuaGUGgag-UUCUG--GGUGCGGCUCC- -5' |
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22361 | 3' | -54.9 | NC_005045.1 | + | 16495 | 0.67 | 0.642032 |
Target: 5'- uGGAgcuggGCCUCAAGAaggGCGCCGAGc -3' miRNA: 3'- -CCUag---UGGAGUUCUgggUGCGGCUCc -5' |
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22361 | 3' | -54.9 | NC_005045.1 | + | 24792 | 0.67 | 0.630953 |
Target: 5'- gGGGUCAggcCCUCGgaguAGACCgCAuCGCCcAGGu -3' miRNA: 3'- -CCUAGU---GGAGU----UCUGG-GU-GCGGcUCC- -5' |
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22361 | 3' | -54.9 | NC_005045.1 | + | 31371 | 0.67 | 0.619875 |
Target: 5'- aGGAUCGCaaCAAGgaaGCCUucgAgGCCGGGGu -3' miRNA: 3'- -CCUAGUGgaGUUC---UGGG---UgCGGCUCC- -5' |
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22361 | 3' | -54.9 | NC_005045.1 | + | 40074 | 0.67 | 0.608807 |
Target: 5'- -cAUCACCaccgacCGAGGCUCACuGCCGaAGGa -3' miRNA: 3'- ccUAGUGGa-----GUUCUGGGUG-CGGC-UCC- -5' |
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22361 | 3' | -54.9 | NC_005045.1 | + | 32604 | 0.68 | 0.597761 |
Target: 5'- uGA-CAcCCUCAAGACCCugGagggcCUGGGGc -3' miRNA: 3'- cCUaGU-GGAGUUCUGGGugC-----GGCUCC- -5' |
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22361 | 3' | -54.9 | NC_005045.1 | + | 30356 | 0.68 | 0.586743 |
Target: 5'- --cUCGCg-CAGGGCCUggGCCGGGGc -3' miRNA: 3'- ccuAGUGgaGUUCUGGGugCGGCUCC- -5' |
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22361 | 3' | -54.9 | NC_005045.1 | + | 18242 | 0.68 | 0.553957 |
Target: 5'- cGGAUCAUCgacgccCAGGACCUcgcagucaugGCGCUGcGGg -3' miRNA: 3'- -CCUAGUGGa-----GUUCUGGG----------UGCGGCuCC- -5' |
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22361 | 3' | -54.9 | NC_005045.1 | + | 39348 | 0.69 | 0.543143 |
Target: 5'- cGGGU-GCCgUCGAGGCCCuuGCCGGu- -3' miRNA: 3'- -CCUAgUGG-AGUUCUGGGugCGGCUcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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