Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22361 | 3' | -54.9 | NC_005045.1 | + | 41838 | 0.66 | 0.685056 |
Target: 5'- cGGAUCAgguUCUCGauGGugCCggcgaagGCGCgGAGGu -3' miRNA: 3'- -CCUAGU---GGAGU--UCugGG-------UGCGgCUCC- -5' |
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22361 | 3' | -54.9 | NC_005045.1 | + | 41119 | 0.67 | 0.664153 |
Target: 5'- aGGUCGCUgcCAGGACCaacacccaGCGCCagGAGGu -3' miRNA: 3'- cCUAGUGGa-GUUCUGGg-------UGCGG--CUCC- -5' |
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22361 | 3' | -54.9 | NC_005045.1 | + | 40074 | 0.67 | 0.608807 |
Target: 5'- -cAUCACCaccgacCGAGGCUCACuGCCGaAGGa -3' miRNA: 3'- ccUAGUGGa-----GUUCUGGGUG-CGGC-UCC- -5' |
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22361 | 3' | -54.9 | NC_005045.1 | + | 39348 | 0.69 | 0.543143 |
Target: 5'- cGGGU-GCCgUCGAGGCCCuuGCCGGu- -3' miRNA: 3'- -CCUAgUGG-AGUUCUGGGugCGGCUcc -5' |
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22361 | 3' | -54.9 | NC_005045.1 | + | 37043 | 0.66 | 0.675173 |
Target: 5'- aGGuUC-CUUcCAAGGccaguCCCugGCCGAGGu -3' miRNA: 3'- -CCuAGuGGA-GUUCU-----GGGugCGGCUCC- -5' |
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22361 | 3' | -54.9 | NC_005045.1 | + | 35945 | 0.69 | 0.532399 |
Target: 5'- cGGAUCGCgUCGAGuACgC-CGUCGAGa -3' miRNA: 3'- -CCUAGUGgAGUUC-UGgGuGCGGCUCc -5' |
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22361 | 3' | -54.9 | NC_005045.1 | + | 33689 | 0.71 | 0.383574 |
Target: 5'- ----gACCaUCAAGGCCCugGCCGAc- -3' miRNA: 3'- ccuagUGG-AGUUCUGGGugCGGCUcc -5' |
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22361 | 3' | -54.9 | NC_005045.1 | + | 32923 | 0.7 | 0.47997 |
Target: 5'- uGGGcCACCUUggGACUCAuCGCCccAGGg -3' miRNA: 3'- -CCUaGUGGAGuuCUGGGU-GCGGc-UCC- -5' |
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22361 | 3' | -54.9 | NC_005045.1 | + | 32604 | 0.68 | 0.597761 |
Target: 5'- uGA-CAcCCUCAAGACCCugGagggcCUGGGGc -3' miRNA: 3'- cCUaGU-GGAGUUCUGGGugC-----GGCUCC- -5' |
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22361 | 3' | -54.9 | NC_005045.1 | + | 32540 | 1.12 | 0.000585 |
Target: 5'- uGGAUCACCUCAAGACCCACGCCGAGGu -3' miRNA: 3'- -CCUAGUGGAGUUCUGGGUGCGGCUCC- -5' |
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22361 | 3' | -54.9 | NC_005045.1 | + | 31371 | 0.67 | 0.619875 |
Target: 5'- aGGAUCGCaaCAAGgaaGCCUucgAgGCCGGGGu -3' miRNA: 3'- -CCUAGUGgaGUUC---UGGG---UgCGGCUCC- -5' |
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22361 | 3' | -54.9 | NC_005045.1 | + | 30356 | 0.68 | 0.586743 |
Target: 5'- --cUCGCg-CAGGGCCUggGCCGGGGc -3' miRNA: 3'- ccuAGUGgaGUUCUGGGugCGGCUCC- -5' |
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22361 | 3' | -54.9 | NC_005045.1 | + | 30016 | 0.76 | 0.197826 |
Target: 5'- cGGAUCGCCUCGugcAGgguacgcagcucgGCCUGCGCCuGGGGa -3' miRNA: 3'- -CCUAGUGGAGU---UC-------------UGGGUGCGG-CUCC- -5' |
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22361 | 3' | -54.9 | NC_005045.1 | + | 29752 | 0.67 | 0.653102 |
Target: 5'- cGGGUgGCCaacggugccaUCAcAGACCU-CGCUGAGGu -3' miRNA: 3'- -CCUAgUGG----------AGU-UCUGGGuGCGGCUCC- -5' |
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22361 | 3' | -54.9 | NC_005045.1 | + | 28532 | 0.71 | 0.420601 |
Target: 5'- cGGAagCGCC--GAGGCUCAgGCCGGGGc -3' miRNA: 3'- -CCUa-GUGGagUUCUGGGUgCGGCUCC- -5' |
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22361 | 3' | -54.9 | NC_005045.1 | + | 26905 | 0.69 | 0.500659 |
Target: 5'- uGGcAUCuuCUUCAGGACCCAaucggUGCCGuAGGc -3' miRNA: 3'- -CC-UAGu-GGAGUUCUGGGU-----GCGGC-UCC- -5' |
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22361 | 3' | -54.9 | NC_005045.1 | + | 25966 | 0.67 | 0.664153 |
Target: 5'- uGGccCACCUgcugcauacCGAccaGCCCugGCCGAGGc -3' miRNA: 3'- -CCuaGUGGA---------GUUc--UGGGugCGGCUCC- -5' |
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22361 | 3' | -54.9 | NC_005045.1 | + | 24792 | 0.67 | 0.630953 |
Target: 5'- gGGGUCAggcCCUCGgaguAGACCgCAuCGCCcAGGu -3' miRNA: 3'- -CCUAGU---GGAGU----UCUGG-GU-GCGGcUCC- -5' |
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22361 | 3' | -54.9 | NC_005045.1 | + | 24325 | 0.72 | 0.357261 |
Target: 5'- uGGAUCGCCU--GGGCa-ACGUCGAGGc -3' miRNA: 3'- -CCUAGUGGAguUCUGggUGCGGCUCC- -5' |
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22361 | 3' | -54.9 | NC_005045.1 | + | 23587 | 0.66 | 0.697078 |
Target: 5'- cGGGUCGCCuUCGAGGuuUCC-UGCC-AGGg -3' miRNA: 3'- -CCUAGUGG-AGUUCU--GGGuGCGGcUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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