miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22365 3' -55.2 NC_005045.1 + 41286 0.84 0.049073
Target:  5'- -gGGCGCCGggGCgGUUGCACAGGCUg -3'
miRNA:   3'- gaCUGCGGCuaUGgUAGCGUGUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 27418 0.68 0.518199
Target:  5'- -gGACGgCGAcgggGCCAUCuCauGCAGGCCc -3'
miRNA:   3'- gaCUGCgGCUa---UGGUAGcG--UGUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 34019 0.68 0.527859
Target:  5'- -gGAUGCCGGUagcccugucccgcGCCcgCuGCACAauGGCCu -3'
miRNA:   3'- gaCUGCGGCUA-------------UGGuaG-CGUGU--CCGG- -5'
22365 3' -55.2 NC_005045.1 + 34576 0.66 0.672929
Target:  5'- -aGACgcccuGCCGGUggGCCAUCGU---GGCCa -3'
miRNA:   3'- gaCUG-----CGGCUA--UGGUAGCGuguCCGG- -5'
22365 3' -55.2 NC_005045.1 + 35338 0.72 0.336252
Target:  5'- ----aGCCGAUGCCGUCGau--GGCCa -3'
miRNA:   3'- gacugCGGCUAUGGUAGCguguCCGG- -5'
22365 3' -55.2 NC_005045.1 + 18812 0.71 0.344595
Target:  5'- uUGGCGCUGuaguauccGCCAUCGCACcagucguuccaGGGUCg -3'
miRNA:   3'- gACUGCGGCua------UGGUAGCGUG-----------UCCGG- -5'
22365 3' -55.2 NC_005045.1 + 254 0.71 0.361724
Target:  5'- gCUGGCGCUGGUAgcCCAcCGCAgGGcGCUg -3'
miRNA:   3'- -GACUGCGGCUAU--GGUaGCGUgUC-CGG- -5'
22365 3' -55.2 NC_005045.1 + 30367 0.71 0.379437
Target:  5'- uUGGCGCUGA-ACUcgCGCA-GGGCCu -3'
miRNA:   3'- gACUGCGGCUaUGGuaGCGUgUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 39757 0.69 0.445819
Target:  5'- -aGcCGCCGAUGCUcacgacGUggaUGUACGGGCCa -3'
miRNA:   3'- gaCuGCGGCUAUGG------UA---GCGUGUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 6991 0.69 0.501205
Target:  5'- --aGCGCCGAUACCcugccugcugugccgGUCgucaacGCACAgGGCCu -3'
miRNA:   3'- gacUGCGGCUAUGG---------------UAG------CGUGU-CCGG- -5'
22365 3' -55.2 NC_005045.1 + 2942 0.69 0.476188
Target:  5'- --cAUGCgGAaGCCAuggUCGCACAGcGCCa -3'
miRNA:   3'- gacUGCGgCUaUGGU---AGCGUGUC-CGG- -5'
22365 3' -55.2 NC_005045.1 + 26281 0.7 0.426185
Target:  5'- uUGAUGUCGGUGCgGUCGgccuCGGGCUu -3'
miRNA:   3'- gACUGCGGCUAUGgUAGCgu--GUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 5232 0.76 0.189406
Target:  5'- -aGACGCUGAcGCUA-CGCACGGuGCCg -3'
miRNA:   3'- gaCUGCGGCUaUGGUaGCGUGUC-CGG- -5'
22365 3' -55.2 NC_005045.1 + 25187 0.69 0.496994
Target:  5'- -aGGCGCCGAUACCcuucaguucgAUgGCACcagcgguauccGGGCg -3'
miRNA:   3'- gaCUGCGGCUAUGG----------UAgCGUG-----------UCCGg -5'
22365 3' -55.2 NC_005045.1 + 32367 0.74 0.254251
Target:  5'- -aGGCGCCGAUACUucgggcacaugcGguugCGUugGGGCCu -3'
miRNA:   3'- gaCUGCGGCUAUGG------------Ua---GCGugUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 10386 0.7 0.416562
Target:  5'- gUGGCGUCGaAUACCGcgaaGUGCAGGCa -3'
miRNA:   3'- gACUGCGGC-UAUGGUag--CGUGUCCGg -5'
22365 3' -55.2 NC_005045.1 + 32472 0.69 0.496994
Target:  5'- -gGACaGCaCGGUGCCcUCGUccaGCAGGUCu -3'
miRNA:   3'- gaCUG-CG-GCUAUGGuAGCG---UGUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 7957 0.68 0.518199
Target:  5'- aUGAuCGCCGccaGCCuGUCGCGCAG-CCu -3'
miRNA:   3'- gACU-GCGGCua-UGG-UAGCGUGUCcGG- -5'
22365 3' -55.2 NC_005045.1 + 30895 0.72 0.328057
Target:  5'- gCUGcCGCUGGUGCgGUCGUACucgaAGGCg -3'
miRNA:   3'- -GACuGCGGCUAUGgUAGCGUG----UCCGg -5'
22365 3' -55.2 NC_005045.1 + 42317 0.71 0.361724
Target:  5'- gCUGGCGCUGGUAgcCCAcCGCAgGGcGCUg -3'
miRNA:   3'- -GACUGCGGCUAU--GGUaGCGUgUC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.