miRNA display CGI


Results 1 - 20 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22370 3' -51.4 NC_005045.1 + 10183 0.84 0.093557
Target:  5'- --cCCGC-UGCGGGACACCacGCCAUGCg -3'
miRNA:   3'- guuGGCGaACGUCUUGUGG--UGGUACG- -5'
22370 3' -51.4 NC_005045.1 + 26118 0.67 0.752112
Target:  5'- aCAGCuCGCcacggUGCu--GCGCCACCA-GCa -3'
miRNA:   3'- -GUUG-GCGa----ACGucuUGUGGUGGUaCG- -5'
22370 3' -51.4 NC_005045.1 + 23847 0.67 0.762962
Target:  5'- gCAGCCuGCUU-CAGGACggccucACCACCGacgGCg -3'
miRNA:   3'- -GUUGG-CGAAcGUCUUG------UGGUGGUa--CG- -5'
22370 3' -51.4 NC_005045.1 + 6838 0.66 0.843293
Target:  5'- cCAGCCauuccgGCggagGUGGAGCACaCACUcgGCg -3'
miRNA:   3'- -GUUGG------CGaa--CGUCUUGUG-GUGGuaCG- -5'
22370 3' -51.4 NC_005045.1 + 14103 0.71 0.523636
Target:  5'- gGGCgGCUUGCAGAGCGuuGaguuguugagUCAUGCg -3'
miRNA:   3'- gUUGgCGAACGUCUUGUggU----------GGUACG- -5'
22370 3' -51.4 NC_005045.1 + 40583 0.71 0.534839
Target:  5'- gCAGCCGC---CAGGGCugCGCCGcGCa -3'
miRNA:   3'- -GUUGGCGaacGUCUUGugGUGGUaCG- -5'
22370 3' -51.4 NC_005045.1 + 39541 0.69 0.638329
Target:  5'- aGGCCaCUUGCucAGGACACUcUCGUGCg -3'
miRNA:   3'- gUUGGcGAACG--UCUUGUGGuGGUACG- -5'
22370 3' -51.4 NC_005045.1 + 32205 0.69 0.649942
Target:  5'- --cCCGaCUUGCccAGCGCCGCCA-GCa -3'
miRNA:   3'- guuGGC-GAACGucUUGUGGUGGUaCG- -5'
22370 3' -51.4 NC_005045.1 + 17870 0.69 0.684622
Target:  5'- gCGGCgGCcaUUGCAuuGAACGCC-UCAUGCa -3'
miRNA:   3'- -GUUGgCG--AACGU--CUUGUGGuGGUACG- -5'
22370 3' -51.4 NC_005045.1 + 27517 0.67 0.752112
Target:  5'- gUAGCCGC-UGgAGGcCGCCGCCuggAUGUa -3'
miRNA:   3'- -GUUGGCGaACgUCUuGUGGUGG---UACG- -5'
22370 3' -51.4 NC_005045.1 + 23431 0.68 0.696088
Target:  5'- uGACCuGCg-GCAG-GCACCGCCAccgGCu -3'
miRNA:   3'- gUUGG-CGaaCGUCuUGUGGUGGUa--CG- -5'
22370 3' -51.4 NC_005045.1 + 7983 0.69 0.669636
Target:  5'- aGGCgCGCUUGCAGGucugcugcaacaugAuCGCCGCCA-GCc -3'
miRNA:   3'- gUUG-GCGAACGUCU--------------U-GUGGUGGUaCG- -5'
22370 3' -51.4 NC_005045.1 + 32166 0.76 0.285862
Target:  5'- aCGACCGagccGCAGAGCACgGCCA-GCg -3'
miRNA:   3'- -GUUGGCgaa-CGUCUUGUGgUGGUaCG- -5'
22370 3' -51.4 NC_005045.1 + 29965 0.68 0.707484
Target:  5'- --cCCGCUUcCAGGGcCGCCAUgAUGCc -3'
miRNA:   3'- guuGGCGAAcGUCUU-GUGGUGgUACG- -5'
22370 3' -51.4 NC_005045.1 + 16236 0.74 0.398077
Target:  5'- gGACCGg-UGCAGGACACCccgcACCAaGCc -3'
miRNA:   3'- gUUGGCgaACGUCUUGUGG----UGGUaCG- -5'
22370 3' -51.4 NC_005045.1 + 32727 0.69 0.661537
Target:  5'- aGGCagaGCUgGCAGuguCGCCGCCcUGCa -3'
miRNA:   3'- gUUGg--CGAaCGUCuu-GUGGUGGuACG- -5'
22370 3' -51.4 NC_005045.1 + 12090 0.68 0.74002
Target:  5'- cCGGCC-CUUGUAccGCACCucgccaccguagaGCCAUGCg -3'
miRNA:   3'- -GUUGGcGAACGUcuUGUGG-------------UGGUACG- -5'
22370 3' -51.4 NC_005045.1 + 32304 0.67 0.762962
Target:  5'- aGACC-CcaGCAGAGCACCcacGCCA-GCg -3'
miRNA:   3'- gUUGGcGaaCGUCUUGUGG---UGGUaCG- -5'
22370 3' -51.4 NC_005045.1 + 32853 0.71 0.512525
Target:  5'- gGACCGCUUcGUGGAGCACgguCACCggGUu -3'
miRNA:   3'- gUUGGCGAA-CGUCUUGUG---GUGGuaCG- -5'
22370 3' -51.4 NC_005045.1 + 22107 0.7 0.603498
Target:  5'- -cACCGCguaggaGCGGAGCG--ACCAUGCg -3'
miRNA:   3'- guUGGCGaa----CGUCUUGUggUGGUACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.