miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22404 3' -59 NC_005056.1 + 12813 0.69 0.251241
Target:  5'- ----gGUCAUUGcCCAGcGCCGCCGCCa -3'
miRNA:   3'- gguggUAGUGGU-GGUCuCGGCGGCGG- -5'
22404 3' -59 NC_005056.1 + 11959 0.69 0.238482
Target:  5'- uCCGCCcUCcCgGCgCGGuuGCCGCUGCCa -3'
miRNA:   3'- -GGUGGuAGuGgUG-GUCu-CGGCGGCGG- -5'
22404 3' -59 NC_005056.1 + 9890 0.7 0.226269
Target:  5'- uUCACCGUgACCACCGGcaCCGUgGCa -3'
miRNA:   3'- -GGUGGUAgUGGUGGUCucGGCGgCGg -5'
22404 3' -59 NC_005056.1 + 6329 0.7 0.225672
Target:  5'- uUCACCGUCGaugucguCCGCCGGAa-CGuCCGCCa -3'
miRNA:   3'- -GGUGGUAGU-------GGUGGUCUcgGC-GGCGG- -5'
22404 3' -59 NC_005056.1 + 19821 0.7 0.220364
Target:  5'- gCCGCCAUUGUCGCCGGGG-CGuuGCUu -3'
miRNA:   3'- -GGUGGUAGUGGUGGUCUCgGCggCGG- -5'
22404 3' -59 NC_005056.1 + 16418 0.7 0.21459
Target:  5'- gUACCAcCGCCACCGcGuauGCCaCCGCCc -3'
miRNA:   3'- gGUGGUaGUGGUGGU-Cu--CGGcGGCGG- -5'
22404 3' -59 NC_005056.1 + 5898 0.7 0.21459
Target:  5'- -aACCGaaugCGCCccgcGCCAGGGCgGCaCGCCg -3'
miRNA:   3'- ggUGGUa---GUGG----UGGUCUCGgCG-GCGG- -5'
22404 3' -59 NC_005056.1 + 1693 0.7 0.21459
Target:  5'- aCCACCGgcggUGCCAguaccacgcauCCGGcGCUGUCGCCa -3'
miRNA:   3'- -GGUGGUa---GUGGU-----------GGUCuCGGCGGCGG- -5'
22404 3' -59 NC_005056.1 + 28196 0.71 0.177723
Target:  5'- aCACCGUCAUCaACCAGAuuaagcacuGCUGCgGCg -3'
miRNA:   3'- gGUGGUAGUGG-UGGUCU---------CGGCGgCGg -5'
22404 3' -59 NC_005056.1 + 4029 0.71 0.17294
Target:  5'- gUCACCGcCACCGCCGGuGGCUuuGCUGCg -3'
miRNA:   3'- -GGUGGUaGUGGUGGUC-UCGG--CGGCGg -5'
22404 3' -59 NC_005056.1 + 4311 0.71 0.17294
Target:  5'- aCCACCGaCACCGCCGGuGGCaccgaGCgucaGCCg -3'
miRNA:   3'- -GGUGGUaGUGGUGGUC-UCGg----CGg---CGG- -5'
22404 3' -59 NC_005056.1 + 11333 0.75 0.090672
Target:  5'- aCCGgcUCAUCACCGCUuGaAGuuGCCGCCg -3'
miRNA:   3'- -GGU--GGUAGUGGUGGuC-UCggCGGCGG- -5'
22404 3' -59 NC_005056.1 + 7681 0.76 0.08561
Target:  5'- aCCACCGgcaACCACaCAGAuaaCCGUCGCCa -3'
miRNA:   3'- -GGUGGUag-UGGUG-GUCUc--GGCGGCGG- -5'
22404 3' -59 NC_005056.1 + 8836 0.77 0.062259
Target:  5'- -aACCccCGCCGCCGGAGCCGgucacCCGCCc -3'
miRNA:   3'- ggUGGuaGUGGUGGUCUCGGC-----GGCGG- -5'
22404 3' -59 NC_005056.1 + 27112 0.78 0.055399
Target:  5'- aCACCAUCGCCGgUAuuGAGCguuaCGCCGCCg -3'
miRNA:   3'- gGUGGUAGUGGUgGU--CUCG----GCGGCGG- -5'
22404 3' -59 NC_005056.1 + 7826 1.12 0.000143
Target:  5'- gCCACCAUCACCACCAGAGCCGCCGCCc -3'
miRNA:   3'- -GGUGGUAGUGGUGGUCUCGGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.