miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22420 5' -45.6 NC_005056.1 + 26501 0.66 0.986556
Target:  5'- aGCGCgUGAau--CAGCGCcauGAAAUgaaCACCg -3'
miRNA:   3'- -CGCG-ACUauauGUCGCG---UUUUA---GUGG- -5'
22420 5' -45.6 NC_005056.1 + 26885 0.66 0.986556
Target:  5'- uGCGCUGGcAUGaGGCGUuacuGAUUGCUg -3'
miRNA:   3'- -CGCGACUaUAUgUCGCGuu--UUAGUGG- -5'
22420 5' -45.6 NC_005056.1 + 26550 0.66 0.984515
Target:  5'- gGCGCUGAUu--CAcGCGCucAAUgCGCg -3'
miRNA:   3'- -CGCGACUAuauGU-CGCGuuUUA-GUGg -5'
22420 5' -45.6 NC_005056.1 + 3447 0.66 0.979737
Target:  5'- aGCGCccauuUGccuuuCAGCGCcGAAUCAUCg -3'
miRNA:   3'- -CGCG-----ACuauauGUCGCGuUUUAGUGG- -5'
22420 5' -45.6 NC_005056.1 + 14180 0.66 0.979737
Target:  5'- -gGCaGAUGaACAGCaacaacagGCAGAAUCACa -3'
miRNA:   3'- cgCGaCUAUaUGUCG--------CGUUUUAGUGg -5'
22420 5' -45.6 NC_005056.1 + 14968 0.66 0.976973
Target:  5'- uGCGCU---AUGCAG-GCAAAucCACCu -3'
miRNA:   3'- -CGCGAcuaUAUGUCgCGUUUuaGUGG- -5'
22420 5' -45.6 NC_005056.1 + 6611 0.67 0.975187
Target:  5'- -gGCUGAacuggGUGCGGUGCugccacacggCACCg -3'
miRNA:   3'- cgCGACUa----UAUGUCGCGuuuua-----GUGG- -5'
22420 5' -45.6 NC_005056.1 + 27118 0.67 0.973941
Target:  5'- uCGCcGGUAUugAGCGUuacgcCGCCg -3'
miRNA:   3'- cGCGaCUAUAugUCGCGuuuuaGUGG- -5'
22420 5' -45.6 NC_005056.1 + 5688 0.67 0.973941
Target:  5'- aCGCUGGUgAUGCcgccgguGCGCuGGcUCACCu -3'
miRNA:   3'- cGCGACUA-UAUGu------CGCGuUUuAGUGG- -5'
22420 5' -45.6 NC_005056.1 + 18586 0.67 0.970629
Target:  5'- gGCGCUGccgGUGUggggauugcgGCGGCGgGAacGAUgGCCg -3'
miRNA:   3'- -CGCGAC---UAUA----------UGUCGCgUU--UUAgUGG- -5'
22420 5' -45.6 NC_005056.1 + 8008 0.67 0.967026
Target:  5'- uCGCUGG---ACAGgGUGAAcaacGUCGCCa -3'
miRNA:   3'- cGCGACUauaUGUCgCGUUU----UAGUGG- -5'
22420 5' -45.6 NC_005056.1 + 18806 0.68 0.95437
Target:  5'- cCGCcGAg--GCGGCaGUAuuGUCACCg -3'
miRNA:   3'- cGCGaCUauaUGUCG-CGUuuUAGUGG- -5'
22420 5' -45.6 NC_005056.1 + 10001 0.68 0.95437
Target:  5'- uGCGC-GAUGuUGCcGCGCAucGUC-CCg -3'
miRNA:   3'- -CGCGaCUAU-AUGuCGCGUuuUAGuGG- -5'
22420 5' -45.6 NC_005056.1 + 25807 0.68 0.95437
Target:  5'- uGCGCUGGUuUGCgaagAGUGUGAcg-CGCCa -3'
miRNA:   3'- -CGCGACUAuAUG----UCGCGUUuuaGUGG- -5'
22420 5' -45.6 NC_005056.1 + 20962 0.68 0.944312
Target:  5'- cGCGCUGAcauuugAUGCAG-GCAGuacgcugaCGCCg -3'
miRNA:   3'- -CGCGACUa-----UAUGUCgCGUUuua-----GUGG- -5'
22420 5' -45.6 NC_005056.1 + 8153 0.68 0.938779
Target:  5'- aGCG-UGAagcACAGCGCGAGAaaACCa -3'
miRNA:   3'- -CGCgACUauaUGUCGCGUUUUagUGG- -5'
22420 5' -45.6 NC_005056.1 + 21005 0.68 0.938779
Target:  5'- aUGCUGAUGcucgACAGCaGgGAuAUUACCg -3'
miRNA:   3'- cGCGACUAUa---UGUCG-CgUUuUAGUGG- -5'
22420 5' -45.6 NC_005056.1 + 5365 0.69 0.932904
Target:  5'- cGUGCUGGa--GCAGgGCAAAGgugCACa -3'
miRNA:   3'- -CGCGACUauaUGUCgCGUUUUa--GUGg -5'
22420 5' -45.6 NC_005056.1 + 20515 0.69 0.929839
Target:  5'- aCGCUGccacaccagaccAUGCAGCGCGAAucagauuAUCGCUg -3'
miRNA:   3'- cGCGACua----------UAUGUCGCGUUU-------UAGUGG- -5'
22420 5' -45.6 NC_005056.1 + 27812 0.69 0.926687
Target:  5'- uGCGCUGuAUAU-CAGCGCGcagggcggggcAAAUguCCc -3'
miRNA:   3'- -CGCGAC-UAUAuGUCGCGU-----------UUUAguGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.