miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22553 5' -55.2 NC_005091.1 + 25186 0.66 0.722668
Target:  5'- -aGCCgGCGCGUCGaUGgcGAcCGCCUc -3'
miRNA:   3'- aaCGG-CGUGCAGC-GCuuCUuGUGGAc -5'
22553 5' -55.2 NC_005091.1 + 53539 0.66 0.71189
Target:  5'- cUUGCCGCACGggCGCGGcuuucuggcgGGAugGUCUa -3'
miRNA:   3'- -AACGGCGUGCa-GCGCU----------UCUugUGGAc -5'
22553 5' -55.2 NC_005091.1 + 37874 0.66 0.71189
Target:  5'- -gGCUGCGCGcgUGCGGGaAGCGCCa- -3'
miRNA:   3'- aaCGGCGUGCa-GCGCUUcUUGUGGac -5'
22553 5' -55.2 NC_005091.1 + 46111 0.66 0.71189
Target:  5'- -aGCUGCACGccaaacuccugcUCGUGccGGACGCCg- -3'
miRNA:   3'- aaCGGCGUGC------------AGCGCuuCUUGUGGac -5'
22553 5' -55.2 NC_005091.1 + 6871 0.66 0.701031
Target:  5'- -aGCUGCGCGUCGgucauCGGAuuuucguccacGAACACCg- -3'
miRNA:   3'- aaCGGCGUGCAGC-----GCUU-----------CUUGUGGac -5'
22553 5' -55.2 NC_005091.1 + 45712 0.66 0.701031
Target:  5'- -gGCCGCGCGcCGCGccGGcuACugCUc -3'
miRNA:   3'- aaCGGCGUGCaGCGCuuCU--UGugGAc -5'
22553 5' -55.2 NC_005091.1 + 6950 0.66 0.690105
Target:  5'- -cGCUGCGCGUgCGaCGGAGAcaGCCa- -3'
miRNA:   3'- aaCGGCGUGCA-GC-GCUUCUugUGGac -5'
22553 5' -55.2 NC_005091.1 + 7996 0.67 0.668094
Target:  5'- gUGCCGUACGaacgugugCGCGAGGGGaucgaggucgGCCUGc -3'
miRNA:   3'- aACGGCGUGCa-------GCGCUUCUUg---------UGGAC- -5'
22553 5' -55.2 NC_005091.1 + 20384 0.67 0.668094
Target:  5'- -aGUaCGUACGUUGCGAcGAACAUCg- -3'
miRNA:   3'- aaCG-GCGUGCAGCGCUuCUUGUGGac -5'
22553 5' -55.2 NC_005091.1 + 2019 0.67 0.668094
Target:  5'- -gGCCGCAuCGUCGCGuucGAucuucuCGCCg- -3'
miRNA:   3'- aaCGGCGU-GCAGCGCuu-CUu-----GUGGac -5'
22553 5' -55.2 NC_005091.1 + 51221 0.67 0.666989
Target:  5'- -cGCCGCGCGUCGCuguGGGAAgcaacgauguaugUugCUGc -3'
miRNA:   3'- aaCGGCGUGCAGCGc--UUCUU-------------GugGAC- -5'
22553 5' -55.2 NC_005091.1 + 25836 0.67 0.65703
Target:  5'- cUUGCCGUACGaCGCGGcgAGAuCAUCa- -3'
miRNA:   3'- -AACGGCGUGCaGCGCU--UCUuGUGGac -5'
22553 5' -55.2 NC_005091.1 + 21307 0.67 0.65703
Target:  5'- -cGCCGcCGCGUaCGCGAGGc-CGCCc- -3'
miRNA:   3'- aaCGGC-GUGCA-GCGCUUCuuGUGGac -5'
22553 5' -55.2 NC_005091.1 + 30443 0.67 0.645944
Target:  5'- aUGCCgaaGCGCGUUcCGAAGcACACCg- -3'
miRNA:   3'- aACGG---CGUGCAGcGCUUCuUGUGGac -5'
22553 5' -55.2 NC_005091.1 + 43185 0.67 0.645944
Target:  5'- --cCCGCuCGUCGCGAA-AGCGCCg- -3'
miRNA:   3'- aacGGCGuGCAGCGCUUcUUGUGGac -5'
22553 5' -55.2 NC_005091.1 + 50590 0.67 0.645944
Target:  5'- -aGUCGCgcaacaGCGUCGCGuuauAGAcguCGCCUGu -3'
miRNA:   3'- aaCGGCG------UGCAGCGCu---UCUu--GUGGAC- -5'
22553 5' -55.2 NC_005091.1 + 38887 0.67 0.645944
Target:  5'- -aGCCG-GCGUCGCGGugAGAagaugcagGCGCUUGa -3'
miRNA:   3'- aaCGGCgUGCAGCGCU--UCU--------UGUGGAC- -5'
22553 5' -55.2 NC_005091.1 + 26774 0.67 0.645944
Target:  5'- -cGCCGCACcggcUCGCGucuu-CGCCUGa -3'
miRNA:   3'- aaCGGCGUGc---AGCGCuucuuGUGGAC- -5'
22553 5' -55.2 NC_005091.1 + 25695 0.67 0.634845
Target:  5'- -cGCCGCauucGCGcuuuUCGCGAAGGGCAUg-- -3'
miRNA:   3'- aaCGGCG----UGC----AGCGCUUCUUGUGgac -5'
22553 5' -55.2 NC_005091.1 + 47050 0.67 0.634845
Target:  5'- aUGCCGCGCucgcgGUCaGCGggGAuCAUCa- -3'
miRNA:   3'- aACGGCGUG-----CAG-CGCuuCUuGUGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.