miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22557 3' -57.2 NC_005091.1 + 44887 0.76 0.155469
Target:  5'- -aGCAG-GCGGUACGGGCGGCGgcaaggcgGCCg -3'
miRNA:   3'- aaCGUCuCGCUGUGCUCGCCGUa-------CGG- -5'
22557 3' -57.2 NC_005091.1 + 34430 0.68 0.467271
Target:  5'- gUGCAGuaCGACAaGcGCGGCcgGCCg -3'
miRNA:   3'- aACGUCucGCUGUgCuCGCCGuaCGG- -5'
22557 3' -57.2 NC_005091.1 + 43245 0.71 0.315321
Target:  5'- -aGCAGAagaacuGCucguCGCGAGUGGCAUGCg -3'
miRNA:   3'- aaCGUCU------CGcu--GUGCUCGCCGUACGg -5'
22557 3' -57.2 NC_005091.1 + 4218 0.73 0.238629
Target:  5'- -gGCAGAG-GAUgaaGuGCGGCGUGCCg -3'
miRNA:   3'- aaCGUCUCgCUGug-CuCGCCGUACGG- -5'
22557 3' -57.2 NC_005091.1 + 3451 1.09 0.000543
Target:  5'- aUUGCAGAGCGACACGAGCGGCAUGCCu -3'
miRNA:   3'- -AACGUCUCGCUGUGCUCGCCGUACGG- -5'
22557 3' -57.2 NC_005091.1 + 47447 0.69 0.399996
Target:  5'- -aGUAGcGCGugucguuccGCACGAGCGGCA-GCg -3'
miRNA:   3'- aaCGUCuCGC---------UGUGCUCGCCGUaCGg -5'
22557 3' -57.2 NC_005091.1 + 47659 0.71 0.307638
Target:  5'- -aGCGGuucauGGCGAuCAUauAGCGGCGUGCCg -3'
miRNA:   3'- aaCGUC-----UCGCU-GUGc-UCGCCGUACGG- -5'
22557 3' -57.2 NC_005091.1 + 36307 0.69 0.418589
Target:  5'- aUGCGcGAGCGuc----GCGGCGUGCCg -3'
miRNA:   3'- aACGU-CUCGCugugcuCGCCGUACGG- -5'
22557 3' -57.2 NC_005091.1 + 51600 0.75 0.177687
Target:  5'- -cGCAGAagcGCGGCACGGGCgcgauucGGCAugauaUGCCg -3'
miRNA:   3'- aaCGUCU---CGCUGUGCUCG-------CCGU-----ACGG- -5'
22557 3' -57.2 NC_005091.1 + 993 0.66 0.550633
Target:  5'- -cGCAGGccugcuCGACGCGGGCGcGC-UGCUc -3'
miRNA:   3'- aaCGUCUc-----GCUGUGCUCGC-CGuACGG- -5'
22557 3' -57.2 NC_005091.1 + 43611 0.68 0.457297
Target:  5'- uUUGuCGGA-CGGCGUGAGCGGCGcaccuuucUGCCa -3'
miRNA:   3'- -AAC-GUCUcGCUGUGCUCGCCGU--------ACGG- -5'
22557 3' -57.2 NC_005091.1 + 48720 0.72 0.251313
Target:  5'- cUGCAcGAGCGACACGGagauaCGGcCAUGCg -3'
miRNA:   3'- aACGU-CUCGCUGUGCUc----GCC-GUACGg -5'
22557 3' -57.2 NC_005091.1 + 10786 0.66 0.594056
Target:  5'- -aGCAGAGUG-CGCGAacgaucGCGGCcaagGCg -3'
miRNA:   3'- aaCGUCUCGCuGUGCU------CGCCGua--CGg -5'
22557 3' -57.2 NC_005091.1 + 28260 0.72 0.257861
Target:  5'- gUGCAaccGGCGACGCGcuGGCGGCuUGCg -3'
miRNA:   3'- aACGUc--UCGCUGUGC--UCGCCGuACGg -5'
22557 3' -57.2 NC_005091.1 + 52228 0.66 0.594056
Target:  5'- gUGCGGGGCGGCuuugAC-AGCGGCuugaaccuuUGCg -3'
miRNA:   3'- aACGUCUCGCUG----UGcUCGCCGu--------ACGg -5'
22557 3' -57.2 NC_005091.1 + 52295 0.66 0.594056
Target:  5'- gUUGCGGAuCGAUuCGAcaGCGGCcaGUGCUg -3'
miRNA:   3'- -AACGUCUcGCUGuGCU--CGCCG--UACGG- -5'
22557 3' -57.2 NC_005091.1 + 3004 0.66 0.605013
Target:  5'- aUUGCAGGGCGACGCGu------UGCCu -3'
miRNA:   3'- -AACGUCUCGCUGUGCucgccguACGG- -5'
22557 3' -57.2 NC_005091.1 + 21116 0.66 0.583131
Target:  5'- -cGCAuaccuGCGAcCAUGGGCGGguUGCa -3'
miRNA:   3'- aaCGUcu---CGCU-GUGCUCGCCguACGg -5'
22557 3' -57.2 NC_005091.1 + 15626 0.69 0.3909
Target:  5'- -aGCGGAGCGcugUugGAGCGGUAguagguUGCg -3'
miRNA:   3'- aaCGUCUCGCu--GugCUCGCCGU------ACGg -5'
22557 3' -57.2 NC_005091.1 + 3036 0.69 0.418589
Target:  5'- -cGCAGAGCGAgaaCGCGAuucGCGUGCUg -3'
miRNA:   3'- aaCGUCUCGCU---GUGCUcgcCGUACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.