miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22561 5' -59.8 NC_005091.1 + 26374 0.66 0.516743
Target:  5'- gCGCGCgguccugaCGGGCAUucAgGCggucugcugCGGCAGCc -3'
miRNA:   3'- -GCGCGa-------GCCCGUAcuUgCG---------GCCGUCG- -5'
22561 5' -59.8 NC_005091.1 + 20144 0.66 0.515727
Target:  5'- aCGCGCagaucgUCGGGCAgcaGAUGUCGaugacguucaagcGCGGCg -3'
miRNA:   3'- -GCGCG------AGCCCGUac-UUGCGGC-------------CGUCG- -5'
22561 5' -59.8 NC_005091.1 + 12092 0.66 0.513699
Target:  5'- aCGCGCgagcCGGGCcugcuugaugaugcgGAACgGCaCGGCgAGCa -3'
miRNA:   3'- -GCGCGa---GCCCGua-------------CUUG-CG-GCCG-UCG- -5'
22561 5' -59.8 NC_005091.1 + 51617 0.66 0.506625
Target:  5'- gGCGCgauucGGCAUGAuAUGCCGaaugaaGCGGCu -3'
miRNA:   3'- gCGCGagc--CCGUACU-UGCGGC------CGUCG- -5'
22561 5' -59.8 NC_005091.1 + 4821 0.66 0.506625
Target:  5'- uCGCGCUCGGcGCGgcGGCaaCGGUcaAGCg -3'
miRNA:   3'- -GCGCGAGCC-CGUacUUGcgGCCG--UCG- -5'
22561 5' -59.8 NC_005091.1 + 22177 0.66 0.506625
Target:  5'- cCGCGCagGucGGCAUuu-UGCUGGCGGCc -3'
miRNA:   3'- -GCGCGagC--CCGUAcuuGCGGCCGUCG- -5'
22561 5' -59.8 NC_005091.1 + 4455 0.66 0.496592
Target:  5'- uCGUGCaUCGGGaa-GGugGCauGCAGCu -3'
miRNA:   3'- -GCGCG-AGCCCguaCUugCGgcCGUCG- -5'
22561 5' -59.8 NC_005091.1 + 1485 0.66 0.496592
Target:  5'- gGCGCUC-GGCAUGc-CGCCcaucGGC-GCg -3'
miRNA:   3'- gCGCGAGcCCGUACuuGCGG----CCGuCG- -5'
22561 5' -59.8 NC_005091.1 + 22778 0.66 0.496592
Target:  5'- uGCGCUCGGcaucgaucacgaGCAcGGACGuuucgaagaaCCGGCgcGGCg -3'
miRNA:   3'- gCGCGAGCC------------CGUaCUUGC----------GGCCG--UCG- -5'
22561 5' -59.8 NC_005091.1 + 56098 0.66 0.496592
Target:  5'- aGCGC--GGGCG-GGAgGUCGGcCGGCg -3'
miRNA:   3'- gCGCGagCCCGUaCUUgCGGCC-GUCG- -5'
22561 5' -59.8 NC_005091.1 + 32843 0.66 0.496592
Target:  5'- aCGCcCUCGGGa---GGgGCgGGCAGCa -3'
miRNA:   3'- -GCGcGAGCCCguacUUgCGgCCGUCG- -5'
22561 5' -59.8 NC_005091.1 + 52720 0.66 0.486649
Target:  5'- uCG-GUUCGGGCAU---CGCUugGGCGGCu -3'
miRNA:   3'- -GCgCGAGCCCGUAcuuGCGG--CCGUCG- -5'
22561 5' -59.8 NC_005091.1 + 42723 0.66 0.486649
Target:  5'- aCGCG-UCGGGCAaGGACGaauacgaaGGCuGCu -3'
miRNA:   3'- -GCGCgAGCCCGUaCUUGCgg------CCGuCG- -5'
22561 5' -59.8 NC_005091.1 + 927 0.67 0.460293
Target:  5'- aGCGC-CGGGUAUuucauggccgcagGAuCGCCgccguacacccacgcGGCAGCg -3'
miRNA:   3'- gCGCGaGCCCGUA-------------CUuGCGG---------------CCGUCG- -5'
22561 5' -59.8 NC_005091.1 + 26438 0.67 0.457411
Target:  5'- cCGCGCgCGGGCcgccgGGGCuGCCaucGUAGCg -3'
miRNA:   3'- -GCGCGaGCCCGua---CUUG-CGGc--CGUCG- -5'
22561 5' -59.8 NC_005091.1 + 3326 0.67 0.457411
Target:  5'- uGCGC--GGGUugaagucaucgAUcGAGCgGCCGGCGGCg -3'
miRNA:   3'- gCGCGagCCCG-----------UA-CUUG-CGGCCGUCG- -5'
22561 5' -59.8 NC_005091.1 + 19545 0.67 0.447875
Target:  5'- uGCGCuuUCGGGCc-GAGCGCCGccgaCAGa -3'
miRNA:   3'- gCGCG--AGCCCGuaCUUGCGGCc---GUCg -5'
22561 5' -59.8 NC_005091.1 + 32565 0.67 0.447875
Target:  5'- uGCGCugaaccUCGGGC-UGAuugACGC-GGUGGCa -3'
miRNA:   3'- gCGCG------AGCCCGuACU---UGCGgCCGUCG- -5'
22561 5' -59.8 NC_005091.1 + 45814 0.67 0.447875
Target:  5'- aCG-GCUCGGuGCAUcggaaGAGCaguaGCCGGCgcGGCg -3'
miRNA:   3'- -GCgCGAGCC-CGUA-----CUUG----CGGCCG--UCG- -5'
22561 5' -59.8 NC_005091.1 + 55807 0.67 0.444092
Target:  5'- gCGCcgacuGCUCGGGCAaguacgcgacgaaGAGCggcgcaGCCGGuCAGCa -3'
miRNA:   3'- -GCG-----CGAGCCCGUa------------CUUG------CGGCC-GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.