Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22563 | 5' | -58.3 | NC_005091.1 | + | 10219 | 0.69 | 0.375726 |
Target: 5'- --gCGCUcgGCGcgUGCCGGCGUaaCGUCCg -3' miRNA: 3'- aagGCGA--CGUuaACGGCUGCG--GCGGG- -5' |
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22563 | 5' | -58.3 | NC_005091.1 | + | 22175 | 0.68 | 0.420831 |
Target: 5'- aUCCGCgcaggucgGCAuuUUGCUGGCGgCCGUgCg -3' miRNA: 3'- aAGGCGa-------CGUu-AACGGCUGC-GGCGgG- -5' |
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22563 | 5' | -58.3 | NC_005091.1 | + | 18965 | 0.68 | 0.439766 |
Target: 5'- gUCCGC----GUUGCCuugaAUGCCGCCCu -3' miRNA: 3'- aAGGCGacguUAACGGc---UGCGGCGGG- -5' |
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22563 | 5' | -58.3 | NC_005091.1 | + | 34860 | 0.68 | 0.393373 |
Target: 5'- -cCCGCUGaagcgGAUcGCCGACGCgCGCggCCg -3' miRNA: 3'- aaGGCGACg----UUAaCGGCUGCG-GCG--GG- -5' |
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22563 | 5' | -58.3 | NC_005091.1 | + | 56291 | 0.67 | 0.479036 |
Target: 5'- -cCCGCUGUAAau-CCGG-GCCGCCa -3' miRNA: 3'- aaGGCGACGUUaacGGCUgCGGCGGg -5' |
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22563 | 5' | -58.3 | NC_005091.1 | + | 26439 | 0.67 | 0.449414 |
Target: 5'- -aCCGCgcGCGGgccGCCGGgGCUGCCa -3' miRNA: 3'- aaGGCGa-CGUUaa-CGGCUgCGGCGGg -5' |
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22563 | 5' | -58.3 | NC_005091.1 | + | 10467 | 0.67 | 0.459178 |
Target: 5'- gUCCGCUucgucgccgaagGCGGUauCCG-CGCCGUCCu -3' miRNA: 3'- aAGGCGA------------CGUUAacGGCuGCGGCGGG- -5' |
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22563 | 5' | -58.3 | NC_005091.1 | + | 52883 | 0.67 | 0.469053 |
Target: 5'- -gCUGCUGCcgcGUgcgGCCuGAuCGCCGCCg -3' miRNA: 3'- aaGGCGACGu--UAa--CGG-CU-GCGGCGGg -5' |
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22563 | 5' | -58.3 | NC_005091.1 | + | 51021 | 0.67 | 0.479036 |
Target: 5'- -aCCGCgcuUGCGGUcGCUGACGCgGCa- -3' miRNA: 3'- aaGGCG---ACGUUAaCGGCUGCGgCGgg -5' |
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22563 | 5' | -58.3 | NC_005091.1 | + | 21308 | 0.67 | 0.499306 |
Target: 5'- -gCCGCcGCGuacG-CGAgGCCGCCCg -3' miRNA: 3'- aaGGCGaCGUuaaCgGCUgCGGCGGG- -5' |
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22563 | 5' | -58.3 | NC_005091.1 | + | 19797 | 0.67 | 0.459178 |
Target: 5'- --gCGUgaUGCGAUUGCCGACGUgcguuucgaUGCCg -3' miRNA: 3'- aagGCG--ACGUUAACGGCUGCG---------GCGGg -5' |
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22563 | 5' | -58.3 | NC_005091.1 | + | 55685 | 0.66 | 0.519949 |
Target: 5'- -gCCGCauCAcUUcGCCGAuCGCCGCCUg -3' miRNA: 3'- aaGGCGacGUuAA-CGGCU-GCGGCGGG- -5' |
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22563 | 5' | -58.3 | NC_005091.1 | + | 14767 | 0.66 | 0.530396 |
Target: 5'- gUUCCuGUcagUGCGGUUGUCGGC-CCGgCCg -3' miRNA: 3'- -AAGG-CG---ACGUUAACGGCUGcGGCgGG- -5' |
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22563 | 5' | -58.3 | NC_005091.1 | + | 45669 | 0.66 | 0.540918 |
Target: 5'- cUUCGU--CAGgaaGCCGACGCCGgCCa -3' miRNA: 3'- aAGGCGacGUUaa-CGGCUGCGGCgGG- -5' |
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22563 | 5' | -58.3 | NC_005091.1 | + | 55504 | 0.66 | 0.550448 |
Target: 5'- -gCCGCgacGCuAUUGCgaagcuucgugagCGugGCCGCCa -3' miRNA: 3'- aaGGCGa--CGuUAACG-------------GCugCGGCGGg -5' |
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22563 | 5' | -58.3 | NC_005091.1 | + | 26305 | 0.66 | 0.562164 |
Target: 5'- -gCCGCU-CAg--GCCGAagcUGCCGCCg -3' miRNA: 3'- aaGGCGAcGUuaaCGGCU---GCGGCGGg -5' |
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22563 | 5' | -58.3 | NC_005091.1 | + | 52206 | 0.66 | 0.562164 |
Target: 5'- gUCCGCaacGCGccccgcGCCGGCgacgGCCGCCUu -3' miRNA: 3'- aAGGCGa--CGUuaa---CGGCUG----CGGCGGG- -5' |
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22563 | 5' | -58.3 | NC_005091.1 | + | 51466 | 0.66 | 0.55151 |
Target: 5'- cUUCCGCc-CAcUUGgCGAUGCCGCgCg -3' miRNA: 3'- -AAGGCGacGUuAACgGCUGCGGCGgG- -5' |
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22563 | 5' | -58.3 | NC_005091.1 | + | 25233 | 0.66 | 0.55151 |
Target: 5'- cUUCaCGCcgaGCAcgagGCCGAucaCGUCGCCCa -3' miRNA: 3'- -AAG-GCGa--CGUuaa-CGGCU---GCGGCGGG- -5' |
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22563 | 5' | -58.3 | NC_005091.1 | + | 11795 | 0.66 | 0.55151 |
Target: 5'- aUCUGUUGguAUcgGCCGcuCGCCGUCg -3' miRNA: 3'- aAGGCGACguUAa-CGGCu-GCGGCGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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