miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22566 3' -56.2 NC_005091.1 + 17000 0.66 0.765046
Target:  5'- cUCGGCGUCuGGUGG-GGC-UGGGCGGn -3'
miRNA:   3'- -GGCCGCAGcUCGUCgCUGcACUUGCC- -5'
22566 3' -56.2 NC_005091.1 + 16307 0.66 0.756135
Target:  5'- gCCGGCGgccucgucccugaucCGGGC-GCGACG---GCGGg -3'
miRNA:   3'- -GGCCGCa--------------GCUCGuCGCUGCacuUGCC- -5'
22566 3' -56.2 NC_005091.1 + 20356 0.66 0.755139
Target:  5'- aCGGCGgcuacUCGcaaAGCGGCGACGcGu-CGGc -3'
miRNA:   3'- gGCCGC-----AGC---UCGUCGCUGCaCuuGCC- -5'
22566 3' -56.2 NC_005091.1 + 20012 0.66 0.755139
Target:  5'- aCGGCGUuaucacugccgUGGGCGGCGAUugguucgaGUGcgccgaGGCGGg -3'
miRNA:   3'- gGCCGCA-----------GCUCGUCGCUG--------CAC------UUGCC- -5'
22566 3' -56.2 NC_005091.1 + 21586 0.66 0.734985
Target:  5'- gCGGCa--GAGCAcgcuuGCGGCGaUGAACGa -3'
miRNA:   3'- gGCCGcagCUCGU-----CGCUGC-ACUUGCc -5'
22566 3' -56.2 NC_005091.1 + 32781 0.66 0.733966
Target:  5'- -gGGCGUCGAgaccaccuucguuGCGGCGgaagcgaugGCGUaGGCGGc -3'
miRNA:   3'- ggCCGCAGCU-------------CGUCGC---------UGCAcUUGCC- -5'
22566 3' -56.2 NC_005091.1 + 31539 0.66 0.724757
Target:  5'- gCUGGCGcUCGuuaCAGCGACGagcguGCGGu -3'
miRNA:   3'- -GGCCGC-AGCuc-GUCGCUGCacu--UGCC- -5'
22566 3' -56.2 NC_005091.1 + 14597 0.66 0.724757
Target:  5'- cCCGGCaUCGAGCGGC-ACGcuuacCGGc -3'
miRNA:   3'- -GGCCGcAGCUCGUCGcUGCacuu-GCC- -5'
22566 3' -56.2 NC_005091.1 + 31095 0.66 0.711334
Target:  5'- uCCGGCGcUcaccgugcaacugaCGGGCGGCGcaGCGUGGGaucaGGc -3'
miRNA:   3'- -GGCCGC-A--------------GCUCGUCGC--UGCACUUg---CC- -5'
22566 3' -56.2 NC_005091.1 + 37081 0.67 0.704054
Target:  5'- uCC-GCGUCGaAGuCAcGgGACGUGAGCGu -3'
miRNA:   3'- -GGcCGCAGC-UC-GU-CgCUGCACUUGCc -5'
22566 3' -56.2 NC_005091.1 + 43602 0.67 0.704054
Target:  5'- aCGGCaUCcuuuGuCGGaCGGCGUGAGCGGc -3'
miRNA:   3'- gGCCGcAGcu--C-GUC-GCUGCACUUGCC- -5'
22566 3' -56.2 NC_005091.1 + 55510 0.67 0.704054
Target:  5'- aCGGCGgccgCGAcGCuauuGCGAagcuuCGUGAGCGu -3'
miRNA:   3'- gGCCGCa---GCU-CGu---CGCU-----GCACUUGCc -5'
22566 3' -56.2 NC_005091.1 + 34962 0.67 0.700923
Target:  5'- gUCGGCuUCGcuuGGCGGCGGCG-GAcuugaaggcgcgucGCGGc -3'
miRNA:   3'- -GGCCGcAGC---UCGUCGCUGCaCU--------------UGCC- -5'
22566 3' -56.2 NC_005091.1 + 38888 0.67 0.692549
Target:  5'- gCCGGCGUCGcGGUgagaagaugcaGGCGcuugauuACGggcGAACGGu -3'
miRNA:   3'- -GGCCGCAGC-UCG-----------UCGC-------UGCa--CUUGCC- -5'
22566 3' -56.2 NC_005091.1 + 7900 0.67 0.683087
Target:  5'- aUCGGCuuGUCGuAGCcucGCGACGguucGAugGGu -3'
miRNA:   3'- -GGCCG--CAGC-UCGu--CGCUGCa---CUugCC- -5'
22566 3' -56.2 NC_005091.1 + 20211 0.67 0.683087
Target:  5'- cCCGGacaCGaAGCGgacGUGGCGUGGAUGGg -3'
miRNA:   3'- -GGCCgcaGC-UCGU---CGCUGCACUUGCC- -5'
22566 3' -56.2 NC_005091.1 + 5323 0.67 0.672531
Target:  5'- aCGGcCGUgCGGcCAGUGAUGUGAucCGGg -3'
miRNA:   3'- gGCC-GCA-GCUcGUCGCUGCACUu-GCC- -5'
22566 3' -56.2 NC_005091.1 + 6615 0.67 0.672531
Target:  5'- gCGGCGUcCGGGCuGCcGGCGUucaugcccGAGCGc -3'
miRNA:   3'- gGCCGCA-GCUCGuCG-CUGCA--------CUUGCc -5'
22566 3' -56.2 NC_005091.1 + 26666 0.67 0.672531
Target:  5'- cCCGGCGUUGAGC-GCaucacGCGcGAACa- -3'
miRNA:   3'- -GGCCGCAGCUCGuCGc----UGCaCUUGcc -5'
22566 3' -56.2 NC_005091.1 + 52453 0.67 0.672531
Target:  5'- -gGGCGcgcCGGGCGGCGACcccaUGAAUGa -3'
miRNA:   3'- ggCCGCa--GCUCGUCGCUGc---ACUUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.