miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22569 3' -55.5 NC_005091.1 + 51579 0.66 0.7666
Target:  5'- uCGUGCGucgcgugacggGCGCGCAgaAGcGCGGCaCGGgCg -3'
miRNA:   3'- -GCAUGC-----------UGUGCGU--UC-CGCCGaGCUgG- -5'
22569 3' -55.5 NC_005091.1 + 8112 0.66 0.7666
Target:  5'- uCGaACGACAgGUAAuGCaGGC-CGACCu -3'
miRNA:   3'- -GCaUGCUGUgCGUUcCG-CCGaGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 9240 0.66 0.756553
Target:  5'- gGUGCGGCccuGCGaAGGGCGaC-CGGCCg -3'
miRNA:   3'- gCAUGCUG---UGCgUUCCGCcGaGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 807 0.66 0.756553
Target:  5'- uCGUGCGcuGCGCugccgcguggguGUAcGGCGGCgauccugCGGCCa -3'
miRNA:   3'- -GCAUGC--UGUG------------CGUuCCGCCGa------GCUGG- -5'
22569 3' -55.5 NC_005091.1 + 31874 0.66 0.756553
Target:  5'- cCGUGuCGuCGCGCucgucGGCGGCcugcUCGugCc -3'
miRNA:   3'- -GCAU-GCuGUGCGuu---CCGCCG----AGCugG- -5'
22569 3' -55.5 NC_005091.1 + 56451 0.66 0.754528
Target:  5'- -cUGCGGCugGCGuauggggcuucuGGCGGgaCGGCa -3'
miRNA:   3'- gcAUGCUGugCGUu-----------CCGCCgaGCUGg -5'
22569 3' -55.5 NC_005091.1 + 44134 0.66 0.746382
Target:  5'- aGUACGuCGCGCAgucugucgaauGGGCGcagucGCUucccggCGACCu -3'
miRNA:   3'- gCAUGCuGUGCGU-----------UCCGC-----CGA------GCUGG- -5'
22569 3' -55.5 NC_005091.1 + 21639 0.66 0.745359
Target:  5'- aCGUACGACAucaugguCGCca-GCGGCUacaccccgGACCa -3'
miRNA:   3'- -GCAUGCUGU-------GCGuucCGCCGAg-------CUGG- -5'
22569 3' -55.5 NC_005091.1 + 34099 0.66 0.7361
Target:  5'- gCGUACGACGCGUugauGaCGGCguuuugaagCGACa -3'
miRNA:   3'- -GCAUGCUGUGCGuu--CcGCCGa--------GCUGg -5'
22569 3' -55.5 NC_005091.1 + 30086 0.66 0.725717
Target:  5'- --gACGGaccaGCGCuuuaAGGGCGGCgaagucgcCGACCa -3'
miRNA:   3'- gcaUGCUg---UGCG----UUCCGCCGa-------GCUGG- -5'
22569 3' -55.5 NC_005091.1 + 49769 0.66 0.725717
Target:  5'- aCGgcuUGGCAUGCAGcacgcuCGGCUCGAUCg -3'
miRNA:   3'- -GCau-GCUGUGCGUUcc----GCCGAGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 5098 0.66 0.725717
Target:  5'- ---uUGACACGCGuuGCGGCgcaggacgCGAUCg -3'
miRNA:   3'- gcauGCUGUGCGUucCGCCGa-------GCUGG- -5'
22569 3' -55.5 NC_005091.1 + 55582 0.66 0.724673
Target:  5'- --cGCGGucCACGCGcucgugcAGGCGGCgaUCGGCg -3'
miRNA:   3'- gcaUGCU--GUGCGU-------UCCGCCG--AGCUGg -5'
22569 3' -55.5 NC_005091.1 + 57768 0.67 0.715244
Target:  5'- cCGU-CGACGcCGUcgugAAGGCGGCcaagCGGCg -3'
miRNA:   3'- -GCAuGCUGU-GCG----UUCCGCCGa---GCUGg -5'
22569 3' -55.5 NC_005091.1 + 16325 0.67 0.715244
Target:  5'- gCGaGCGGCGCaucGCAugccGGCGGcCUCGuCCc -3'
miRNA:   3'- -GCaUGCUGUG---CGUu---CCGCC-GAGCuGG- -5'
22569 3' -55.5 NC_005091.1 + 7504 0.67 0.715244
Target:  5'- --aGCGGCA-GCcgguucuucGGGCaGCUCGACCa -3'
miRNA:   3'- gcaUGCUGUgCGu--------UCCGcCGAGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 374 0.67 0.715244
Target:  5'- cCGU-CGACGcCGUcgugAAGGCGGCcaagCGGCg -3'
miRNA:   3'- -GCAuGCUGU-GCG----UUCCGCCGa---GCUGg -5'
22569 3' -55.5 NC_005091.1 + 35214 0.67 0.714192
Target:  5'- --cGCGACGCGUaccacaagcugcuGAccGGCcGCUCGGCCc -3'
miRNA:   3'- gcaUGCUGUGCG-------------UU--CCGcCGAGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 52733 0.67 0.708921
Target:  5'- uCGUACcucauccucgguucgGGCAuCGCuuGGGCGGCugUCGGCUu -3'
miRNA:   3'- -GCAUG---------------CUGU-GCGu-UCCGCCG--AGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 38403 0.67 0.704691
Target:  5'- aGUACGcUACGagcaGCGGCUCG-CCg -3'
miRNA:   3'- gCAUGCuGUGCguucCGCCGAGCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.