miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22576 5' -53.6 NC_005091.1 + 883 0.66 0.817597
Target:  5'- cGCGGCAgCGCAGCGCAcgagaucggcauUCAgUUGaaaGg -3'
miRNA:   3'- uCGCUGU-GCGUCGUGU------------AGUgAACg--Cg -5'
22576 5' -53.6 NC_005091.1 + 17138 0.66 0.817597
Target:  5'- gAGC-ACGCGCAGCGgCAUUACgUGUu- -3'
miRNA:   3'- -UCGcUGUGCGUCGU-GUAGUGaACGcg -5'
22576 5' -53.6 NC_005091.1 + 30516 0.66 0.817597
Target:  5'- cAGCGGCGCGCucuGCGUCAUgaGCa- -3'
miRNA:   3'- -UCGCUGUGCGucgUGUAGUGaaCGcg -5'
22576 5' -53.6 NC_005091.1 + 37793 0.66 0.8119
Target:  5'- uGGCGcuucccgcacGCGCGCAGCccuugaauccguuuCGUCACggUGCGg -3'
miRNA:   3'- -UCGC----------UGUGCGUCGu-------------GUAGUGa-ACGCg -5'
22576 5' -53.6 NC_005091.1 + 52081 0.66 0.808063
Target:  5'- uGCGACGcCGUAGCGCcgaccAUCGCgaGCu- -3'
miRNA:   3'- uCGCUGU-GCGUCGUG-----UAGUGaaCGcg -5'
22576 5' -53.6 NC_005091.1 + 9201 0.66 0.808063
Target:  5'- uGGaCGACAUacauucuCGGCACAUCGgggUUGCGCu -3'
miRNA:   3'- -UC-GCUGUGc------GUCGUGUAGUg--AACGCG- -5'
22576 5' -53.6 NC_005091.1 + 41627 0.66 0.808063
Target:  5'- cAGCGA-ACGaCAGCAUGUaCGCacGCGCc -3'
miRNA:   3'- -UCGCUgUGC-GUCGUGUA-GUGaaCGCG- -5'
22576 5' -53.6 NC_005091.1 + 39880 0.66 0.808063
Target:  5'- uGCGAUagaACGCGGCcgacCAUCcgGCU-GCGCc -3'
miRNA:   3'- uCGCUG---UGCGUCGu---GUAG--UGAaCGCG- -5'
22576 5' -53.6 NC_005091.1 + 30699 0.66 0.808063
Target:  5'- --aGGCACGCAGUGCuUCg---GCGCg -3'
miRNA:   3'- ucgCUGUGCGUCGUGuAGugaaCGCG- -5'
22576 5' -53.6 NC_005091.1 + 49714 0.66 0.807099
Target:  5'- cGCGuagcucuGCAUGCggGGCACGUCgGCcgUGCGUg -3'
miRNA:   3'- uCGC-------UGUGCG--UCGUGUAG-UGa-ACGCG- -5'
22576 5' -53.6 NC_005091.1 + 24410 0.66 0.798339
Target:  5'- cGGCGGCACGacggucgacggcCAGCcUAUCGCcgcgaucaagGCGCa -3'
miRNA:   3'- -UCGCUGUGC------------GUCGuGUAGUGaa--------CGCG- -5'
22576 5' -53.6 NC_005091.1 + 51658 0.66 0.798339
Target:  5'- cGCGcccguCACGCGacGCACGaCACaaUGCGCa -3'
miRNA:   3'- uCGCu----GUGCGU--CGUGUaGUGa-ACGCG- -5'
22576 5' -53.6 NC_005091.1 + 25632 0.66 0.798339
Target:  5'- uGCGGCGgGCAGCcgAUCGCcgagcuggccGCGCa -3'
miRNA:   3'- uCGCUGUgCGUCGugUAGUGaa--------CGCG- -5'
22576 5' -53.6 NC_005091.1 + 54619 0.66 0.798339
Target:  5'- uGGCGcACAUGUc-CGCGUagGCUUGCGCc -3'
miRNA:   3'- -UCGC-UGUGCGucGUGUAg-UGAACGCG- -5'
22576 5' -53.6 NC_005091.1 + 42659 0.66 0.797357
Target:  5'- gAGCG-UGCGCGGCGCGgacaagcgucuucUCGgCgaGCGCg -3'
miRNA:   3'- -UCGCuGUGCGUCGUGU-------------AGU-GaaCGCG- -5'
22576 5' -53.6 NC_005091.1 + 14596 0.66 0.788436
Target:  5'- -cCGGCAUcgaGCGGCACGcUUACcgGCGCa -3'
miRNA:   3'- ucGCUGUG---CGUCGUGU-AGUGaaCGCG- -5'
22576 5' -53.6 NC_005091.1 + 46087 0.66 0.788436
Target:  5'- -cCGGCGCGguGCGCGagCGCUUcuucaGCGUc -3'
miRNA:   3'- ucGCUGUGCguCGUGUa-GUGAA-----CGCG- -5'
22576 5' -53.6 NC_005091.1 + 6449 0.66 0.788436
Target:  5'- cAGCGuGCGCGCuGCGCugaaggaaGCagGCGCg -3'
miRNA:   3'- -UCGC-UGUGCGuCGUGuag-----UGaaCGCG- -5'
22576 5' -53.6 NC_005091.1 + 44198 0.66 0.788436
Target:  5'- cGCGACAgugccguaUGCGGCGuCuUCGCcUGCGUu -3'
miRNA:   3'- uCGCUGU--------GCGUCGU-GuAGUGaACGCG- -5'
22576 5' -53.6 NC_005091.1 + 54955 0.66 0.778365
Target:  5'- aAGCGcCGCGCGGCuguccCGUUuucUGCGCc -3'
miRNA:   3'- -UCGCuGUGCGUCGu----GUAGugaACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.