miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22583 5' -56.5 NC_005091.1 + 52132 0.66 0.673242
Target:  5'- gCGGGgcGCguUGCgGACgauguaaucgaaCGACCAGCg -3'
miRNA:   3'- -GUCCuuCGguACGaCUG------------GCUGGUCGg -5'
22583 5' -56.5 NC_005091.1 + 9801 0.66 0.673242
Target:  5'- uCAGGAAGCguUaccggguccGCUGGgCGGCUgaaGGCCc -3'
miRNA:   3'- -GUCCUUCGguA---------CGACUgGCUGG---UCGG- -5'
22583 5' -56.5 NC_005091.1 + 35200 0.66 0.673242
Target:  5'- ---cAAGCU--GCUGACCGGCCgcucGGCCc -3'
miRNA:   3'- guccUUCGGuaCGACUGGCUGG----UCGG- -5'
22583 5' -56.5 NC_005091.1 + 3725 0.66 0.662351
Target:  5'- gCAGGAacGGCagcagGUcGGCCGGuuuCCAGCCa -3'
miRNA:   3'- -GUCCU--UCGgua--CGaCUGGCU---GGUCGG- -5'
22583 5' -56.5 NC_005091.1 + 9656 0.66 0.662351
Target:  5'- uCAGGAugguagcGCCGUugaugGCUG-CCGACacggCAGCCu -3'
miRNA:   3'- -GUCCUu------CGGUA-----CGACuGGCUG----GUCGG- -5'
22583 5' -56.5 NC_005091.1 + 10745 0.66 0.651432
Target:  5'- gCGGGAggcgaucaagaaGGCCAUGgaGAUCGAgaAGCg -3'
miRNA:   3'- -GUCCU------------UCGGUACgaCUGGCUggUCGg -5'
22583 5' -56.5 NC_005091.1 + 2482 0.66 0.651432
Target:  5'- aCGGGAAGCUcggaGUGC-GGCacgaGAUCGGCg -3'
miRNA:   3'- -GUCCUUCGG----UACGaCUGg---CUGGUCGg -5'
22583 5' -56.5 NC_005091.1 + 4425 0.66 0.651432
Target:  5'- gUAGGcAGGUCGaGCgGGCaCGcCCAGCCg -3'
miRNA:   3'- -GUCC-UUCGGUaCGaCUG-GCuGGUCGG- -5'
22583 5' -56.5 NC_005091.1 + 9188 0.66 0.629552
Target:  5'- ---uGAGCC-UGCgucGCCGugCAGCCg -3'
miRNA:   3'- guccUUCGGuACGac-UGGCugGUCGG- -5'
22583 5' -56.5 NC_005091.1 + 5060 0.66 0.629552
Target:  5'- -----uGUCAUGC-GGCCGuACCGGCCu -3'
miRNA:   3'- guccuuCGGUACGaCUGGC-UGGUCGG- -5'
22583 5' -56.5 NC_005091.1 + 34978 0.66 0.629552
Target:  5'- aAGGggGCCAUug-GAaCGACC-GCCg -3'
miRNA:   3'- gUCCuuCGGUAcgaCUgGCUGGuCGG- -5'
22583 5' -56.5 NC_005091.1 + 45357 0.67 0.60768
Target:  5'- gCAGGAgAGUaacGagaUGGCCGACCAGaCCa -3'
miRNA:   3'- -GUCCU-UCGguaCg--ACUGGCUGGUC-GG- -5'
22583 5' -56.5 NC_005091.1 + 3612 0.67 0.606588
Target:  5'- aCGGGAaaaucgucaAGCCcgaugGCUGgaaaccgGCCGACCugcuGCCg -3'
miRNA:   3'- -GUCCU---------UCGGua---CGAC-------UGGCUGGu---CGG- -5'
22583 5' -56.5 NC_005091.1 + 17868 0.67 0.596771
Target:  5'- cCGGGAc-CUGUGCgaGAUCGGCCGGCg -3'
miRNA:   3'- -GUCCUucGGUACGa-CUGGCUGGUCGg -5'
22583 5' -56.5 NC_005091.1 + 36499 0.67 0.596771
Target:  5'- -uGGAAgcGCCGUGCUGcGgCGGCCGGaUCg -3'
miRNA:   3'- guCCUU--CGGUACGAC-UgGCUGGUC-GG- -5'
22583 5' -56.5 NC_005091.1 + 9088 0.67 0.585892
Target:  5'- uGGGucggcGUCGUGCUGAagcgcaaccCCGAUguGCCg -3'
miRNA:   3'- gUCCuu---CGGUACGACU---------GGCUGguCGG- -5'
22583 5' -56.5 NC_005091.1 + 8221 0.67 0.585892
Target:  5'- aAGGAAGCggaCGUGCUGAUCGcgguACUGGgCg -3'
miRNA:   3'- gUCCUUCG---GUACGACUGGC----UGGUCgG- -5'
22583 5' -56.5 NC_005091.1 + 4260 0.67 0.578298
Target:  5'- -cGGAAGCCAUucagcuccugcaaggGCUGAcgacucaucCCGuggucguguucgcGCCGGCCg -3'
miRNA:   3'- guCCUUCGGUA---------------CGACU---------GGC-------------UGGUCGG- -5'
22583 5' -56.5 NC_005091.1 + 20231 0.67 0.57505
Target:  5'- cCAGuGAAGCCGcGCagucgagcgUGAUCGAaUCGGCCg -3'
miRNA:   3'- -GUC-CUUCGGUaCG---------ACUGGCU-GGUCGG- -5'
22583 5' -56.5 NC_005091.1 + 45567 0.68 0.542836
Target:  5'- uCGGGucGCCGaugugaaGCUGGCCGGCguCGGCUu -3'
miRNA:   3'- -GUCCuuCGGUa------CGACUGGCUG--GUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.