miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22586 5' -57.7 NC_005091.1 + 30159 0.66 0.558423
Target:  5'- aAAGCGCUGGuCCGuCAgacuguccaugACAcucuGGCGGUa -3'
miRNA:   3'- -UUCGUGACC-GGCuGU-----------UGUu---CCGCCGc -5'
22586 5' -57.7 NC_005091.1 + 34419 0.69 0.388841
Target:  5'- cAAGCGC-GGCCGGCcGCAGGGCu--- -3'
miRNA:   3'- -UUCGUGaCCGGCUGuUGUUCCGccgc -5'
22586 5' -57.7 NC_005091.1 + 32178 0.69 0.365978
Target:  5'- cGGCGCggacccGGCCGGCGGCAAGGgcaacgaagcugaaGGCa -3'
miRNA:   3'- uUCGUGa-----CCGGCUGUUGUUCCg-------------CCGc -5'
22586 5' -57.7 NC_005091.1 + 24733 1.06 0.000859
Target:  5'- aAAGCACUGGCCGACAACAAGGCGGCGu -3'
miRNA:   3'- -UUCGUGACCGGCUGUUGUUCCGCCGC- -5'
22586 5' -57.7 NC_005091.1 + 28379 0.67 0.49516
Target:  5'- -cGCuCUGGuucaCCGGCAGCAAGGCGa-- -3'
miRNA:   3'- uuCGuGACC----GGCUGUUGUUCCGCcgc -5'
22586 5' -57.7 NC_005091.1 + 52383 0.67 0.477815
Target:  5'- cAGCACUGGCCGcugucgaaucgauccGCAACGcacacuaAGG-GGCu -3'
miRNA:   3'- uUCGUGACCGGC---------------UGUUGU-------UCCgCCGc -5'
22586 5' -57.7 NC_005091.1 + 55099 0.67 0.474785
Target:  5'- uAAGCACgaggGGUCGuCAGCAcGGGauacCGGCGg -3'
miRNA:   3'- -UUCGUGa---CCGGCuGUUGU-UCC----GCCGC- -5'
22586 5' -57.7 NC_005091.1 + 27540 0.67 0.464756
Target:  5'- gAAGCACUGGCCGAUGuguuuGCAAcGGagcugucuuucuCGGUGc -3'
miRNA:   3'- -UUCGUGACCGGCUGU-----UGUU-CC------------GCCGC- -5'
22586 5' -57.7 NC_005091.1 + 48640 0.66 0.580052
Target:  5'- uGGCGCgcaGGcCCGAUGAggaucgcuCGGGGCGGCc -3'
miRNA:   3'- uUCGUGa--CC-GGCUGUU--------GUUCCGCCGc -5'
22586 5' -57.7 NC_005091.1 + 14337 0.68 0.407054
Target:  5'- cGGUcaACgGGUCGGCGuacgacacGCAAGGCGGCu -3'
miRNA:   3'- uUCG--UGaCCGGCUGU--------UGUUCCGCCGc -5'
22586 5' -57.7 NC_005091.1 + 23290 0.68 0.417297
Target:  5'- cGGCACgguagucggccugaaGGCUGAUGAacAGGCGGCGa -3'
miRNA:   3'- uUCGUGa--------------CCGGCUGUUguUCCGCCGC- -5'
22586 5' -57.7 NC_005091.1 + 19418 0.68 0.425793
Target:  5'- cGGCACaucuucaaaGCCGGCAuguGCGAGcGCGGCGc -3'
miRNA:   3'- uUCGUGac-------CGGCUGU---UGUUC-CGCCGC- -5'
22586 5' -57.7 NC_005091.1 + 36439 0.66 0.547692
Target:  5'- gGGGCGuCUGGCUgaagGACGGCGAGucgaugaCGGCGg -3'
miRNA:   3'- -UUCGU-GACCGG----CUGUUGUUCc------GCCGC- -5'
22586 5' -57.7 NC_005091.1 + 30284 0.68 0.41636
Target:  5'- gAAGaCGCcccGGCCGGCGACgAAGGCgaagacGGCGa -3'
miRNA:   3'- -UUC-GUGa--CCGGCUGUUG-UUCCG------CCGC- -5'
22586 5' -57.7 NC_005091.1 + 4225 0.66 0.537027
Target:  5'- cGGCugUGGCaGAgGAUgAAGuGCGGCGu -3'
miRNA:   3'- uUCGugACCGgCUgUUG-UUC-CGCCGC- -5'
22586 5' -57.7 NC_005091.1 + 25040 0.68 0.454838
Target:  5'- cGAG-ACUGGUCGGCAcUgcGGCGGCc -3'
miRNA:   3'- -UUCgUGACCGGCUGUuGuuCCGCCGc -5'
22586 5' -57.7 NC_005091.1 + 6187 0.68 0.407054
Target:  5'- uAGCGCgggGGCUugcgGGCGACGAGccgaaGCGGCGc -3'
miRNA:   3'- uUCGUGa--CCGG----CUGUUGUUC-----CGCCGC- -5'
22586 5' -57.7 NC_005091.1 + 53645 0.69 0.371171
Target:  5'- -uGCGCUGGCaaugguGCGACGAGGUagaaGGCGc -3'
miRNA:   3'- uuCGUGACCGgc----UGUUGUUCCG----CCGC- -5'
22586 5' -57.7 NC_005091.1 + 40636 0.66 0.526435
Target:  5'- cGGCGCgGGauaCCGACu-CGGcGGCGGCGa -3'
miRNA:   3'- uUCGUGaCC---GGCUGuuGUU-CCGCCGC- -5'
22586 5' -57.7 NC_005091.1 + 31093 0.67 0.474785
Target:  5'- cGGCGCUcaCCGuGCAACugacGGGCGGCGc -3'
miRNA:   3'- uUCGUGAccGGC-UGUUGu---UCCGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.