Results 1 - 20 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22590 | 5' | -56.2 | NC_005091.1 | + | 57908 | 0.74 | 0.251851 |
Target: 5'- aUUGCUGCUCGACCuGCgccGUCGCGuGCGu -3' miRNA: 3'- aAGCGACGAGCUGG-CG---UAGUGC-UGCc -5' |
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22590 | 5' | -56.2 | NC_005091.1 | + | 57859 | 0.8 | 0.0979 |
Target: 5'- -cCGCcGCUUGGCCGCcuUCACGACGGc -3' miRNA: 3'- aaGCGaCGAGCUGGCGu-AGUGCUGCC- -5' |
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22590 | 5' | -56.2 | NC_005091.1 | + | 57483 | 0.66 | 0.703185 |
Target: 5'- -gCGCUGCaUGACCGCGcaauuccagaggauuUCAUGGCc- -3' miRNA: 3'- aaGCGACGaGCUGGCGU---------------AGUGCUGcc -5' |
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22590 | 5' | -56.2 | NC_005091.1 | + | 55023 | 0.7 | 0.455495 |
Target: 5'- -gCGCggcGCUUGGCgagCGCGUUGCGGCGGc -3' miRNA: 3'- aaGCGa--CGAGCUG---GCGUAGUGCUGCC- -5' |
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22590 | 5' | -56.2 | NC_005091.1 | + | 53050 | 0.66 | 0.666603 |
Target: 5'- gUUCGCUGaucgCGGCgaGCAUgGCGaACGGc -3' miRNA: 3'- -AAGCGACga--GCUGg-CGUAgUGC-UGCC- -5' |
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22590 | 5' | -56.2 | NC_005091.1 | + | 52026 | 0.66 | 0.698914 |
Target: 5'- -gCGCa-CUCGGCuacuCGCGUCACGGCGu -3' miRNA: 3'- aaGCGacGAGCUG----GCGUAGUGCUGCc -5' |
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22590 | 5' | -56.2 | NC_005091.1 | + | 50709 | 0.71 | 0.369772 |
Target: 5'- gUCGCcaUGCUUGuaccgcuccggauaGCCGCGcgCACGACGGc -3' miRNA: 3'- aAGCG--ACGAGC--------------UGGCGUa-GUGCUGCC- -5' |
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22590 | 5' | -56.2 | NC_005091.1 | + | 50662 | 0.66 | 0.660097 |
Target: 5'- -aCGCUGUUgCGcgacuACCGCAccggcaacauccgccUUACGACGGu -3' miRNA: 3'- aaGCGACGA-GC-----UGGCGU---------------AGUGCUGCC- -5' |
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22590 | 5' | -56.2 | NC_005091.1 | + | 49050 | 0.66 | 0.698914 |
Target: 5'- -gCGCUGCUgCGcACCGUGU-GCgGGCGGg -3' miRNA: 3'- aaGCGACGA-GC-UGGCGUAgUG-CUGCC- -5' |
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22590 | 5' | -56.2 | NC_005091.1 | + | 48707 | 0.66 | 0.655755 |
Target: 5'- --gGCUGCUgCGuguuggugucGCCGCGUCACuaGACGa -3' miRNA: 3'- aagCGACGA-GC----------UGGCGUAGUG--CUGCc -5' |
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22590 | 5' | -56.2 | NC_005091.1 | + | 44574 | 0.66 | 0.655755 |
Target: 5'- -gCGCcuuCUCGGCCGCGUCguACGugGc -3' miRNA: 3'- aaGCGac-GAGCUGGCGUAG--UGCugCc -5' |
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22590 | 5' | -56.2 | NC_005091.1 | + | 44119 | 0.66 | 0.698914 |
Target: 5'- cUUCGgcgacCUGCUCGACCGUgccgagcagaugAUCGgGGCGu -3' miRNA: 3'- -AAGC-----GACGAGCUGGCG------------UAGUgCUGCc -5' |
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22590 | 5' | -56.2 | NC_005091.1 | + | 42042 | 0.7 | 0.436145 |
Target: 5'- -gUGCUGCUCGACC---UCGCGAaucCGGa -3' miRNA: 3'- aaGCGACGAGCUGGcguAGUGCU---GCC- -5' |
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22590 | 5' | -56.2 | NC_005091.1 | + | 41810 | 0.66 | 0.709572 |
Target: 5'- aUUGCUGCacgCGGCCGCcgUugaACGACc- -3' miRNA: 3'- aAGCGACGa--GCUGGCGuaG---UGCUGcc -5' |
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22590 | 5' | -56.2 | NC_005091.1 | + | 41786 | 0.66 | 0.666603 |
Target: 5'- -gCGCaGUUCGAgCGCGUgAUGACGc -3' miRNA: 3'- aaGCGaCGAGCUgGCGUAgUGCUGCc -5' |
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22590 | 5' | -56.2 | NC_005091.1 | + | 40732 | 0.67 | 0.644886 |
Target: 5'- -gCGCUGCgCGuACCGagaauUCGCGACGcGg -3' miRNA: 3'- aaGCGACGaGC-UGGCgu---AGUGCUGC-C- -5' |
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22590 | 5' | -56.2 | NC_005091.1 | + | 38007 | 0.74 | 0.257686 |
Target: 5'- gUUCGCUGCUCGcuucuucuugaacGCUGC-UCGCaGACGGc -3' miRNA: 3'- -AAGCGACGAGC-------------UGGCGuAGUG-CUGCC- -5' |
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22590 | 5' | -56.2 | NC_005091.1 | + | 36489 | 0.69 | 0.516132 |
Target: 5'- -gUGCUGCggCGGCCGgAUCGaaGCGGa -3' miRNA: 3'- aaGCGACGa-GCUGGCgUAGUgcUGCC- -5' |
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22590 | 5' | -56.2 | NC_005091.1 | + | 33507 | 0.68 | 0.537075 |
Target: 5'- --gGCcgGCaUCGAuCCGCAUCACGGCu- -3' miRNA: 3'- aagCGa-CG-AGCU-GGCGUAGUGCUGcc -5' |
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22590 | 5' | -56.2 | NC_005091.1 | + | 32120 | 0.69 | 0.505784 |
Target: 5'- -gUGCUGCUCGcgucGCuCGcCAagGCGACGGg -3' miRNA: 3'- aaGCGACGAGC----UG-GC-GUagUGCUGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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