miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22596 5' -55.4 NC_005091.1 + 9200 0.66 0.758129
Target:  5'- gCCG--UGCAGCCGGCGaC-CCGAauCGCg -3'
miRNA:   3'- -GGCcuACGUCGGCUGUaGuGGCU--GUG- -5'
22596 5' -55.4 NC_005091.1 + 54732 0.66 0.758129
Target:  5'- gCCGGGccaaaGCGGCaCGGCAUgACUGAgAUu -3'
miRNA:   3'- -GGCCUa----CGUCG-GCUGUAgUGGCUgUG- -5'
22596 5' -55.4 NC_005091.1 + 32810 0.66 0.758129
Target:  5'- gUCGcGAUGCAcGUCGAUAUguCCGAgAUg -3'
miRNA:   3'- -GGC-CUACGU-CGGCUGUAguGGCUgUG- -5'
22596 5' -55.4 NC_005091.1 + 50300 0.66 0.758129
Target:  5'- gUCGGcucGCGGCCGA--UCAcCCGGCAg -3'
miRNA:   3'- -GGCCua-CGUCGGCUguAGU-GGCUGUg -5'
22596 5' -55.4 NC_005091.1 + 18980 0.66 0.75405
Target:  5'- gCCGcGAUGCucggcggaaucguGCCGGCGUU-CCGGgGCg -3'
miRNA:   3'- -GGC-CUACGu------------CGGCUGUAGuGGCUgUG- -5'
22596 5' -55.4 NC_005091.1 + 33956 0.66 0.747897
Target:  5'- uCUGGAUGUuguucgcaccGCCGACGUaCGCCuucaGCGCg -3'
miRNA:   3'- -GGCCUACGu---------CGGCUGUA-GUGGc---UGUG- -5'
22596 5' -55.4 NC_005091.1 + 53067 0.66 0.747897
Target:  5'- gCCGGucAUGguGCgGGguUCGCUGAuCGCg -3'
miRNA:   3'- -GGCC--UACguCGgCUguAGUGGCU-GUG- -5'
22596 5' -55.4 NC_005091.1 + 15525 0.66 0.747897
Target:  5'- aCGGGUGCggGGCCGuACAccgaucagguguUCAUCGAUuucGCg -3'
miRNA:   3'- gGCCUACG--UCGGC-UGU------------AGUGGCUG---UG- -5'
22596 5' -55.4 NC_005091.1 + 7196 0.66 0.741702
Target:  5'- aCGGAUggcggcgagcagcgaGCGGCCGACGUuccggucuucaaCGCC-ACGCu -3'
miRNA:   3'- gGCCUA---------------CGUCGGCUGUA------------GUGGcUGUG- -5'
22596 5' -55.4 NC_005091.1 + 31228 0.66 0.737551
Target:  5'- gCGGAUucGCAGCuCGaACAgCGCCaGCGCa -3'
miRNA:   3'- gGCCUA--CGUCG-GC-UGUaGUGGcUGUG- -5'
22596 5' -55.4 NC_005091.1 + 17497 0.66 0.737551
Target:  5'- uUCGGuauUGCAGgCGAacgcagCGCCGACGa -3'
miRNA:   3'- -GGCCu--ACGUCgGCUgua---GUGGCUGUg -5'
22596 5' -55.4 NC_005091.1 + 25884 0.66 0.737551
Target:  5'- gUCGGccaagGCAGCCGGCGcaacgacgaACCaGACGCg -3'
miRNA:   3'- -GGCCua---CGUCGGCUGUag-------UGG-CUGUG- -5'
22596 5' -55.4 NC_005091.1 + 4217 0.66 0.737551
Target:  5'- cCCGGcgGCGcGCC--CGUCACCGugccguacgucaGCACg -3'
miRNA:   3'- -GGCCuaCGU-CGGcuGUAGUGGC------------UGUG- -5'
22596 5' -55.4 NC_005091.1 + 24753 0.66 0.737551
Target:  5'- uCCGuGAUGCccuGCCGAgCuguUCugCGACGu -3'
miRNA:   3'- -GGC-CUACGu--CGGCU-Gu--AGugGCUGUg -5'
22596 5' -55.4 NC_005091.1 + 10335 0.66 0.73651
Target:  5'- cCCGGAagaguacUGCGcgugucgcgcGcCCGACAUCGaggaCGGCGCg -3'
miRNA:   3'- -GGCCU-------ACGU----------C-GGCUGUAGUg---GCUGUG- -5'
22596 5' -55.4 NC_005091.1 + 12802 0.66 0.7271
Target:  5'- aCCGGAaGCAGUCGAgG--GgCGAUACg -3'
miRNA:   3'- -GGCCUaCGUCGGCUgUagUgGCUGUG- -5'
22596 5' -55.4 NC_005091.1 + 34835 0.66 0.7271
Target:  5'- -----cGCGGCCggGACAUgGCCGACAa -3'
miRNA:   3'- ggccuaCGUCGG--CUGUAgUGGCUGUg -5'
22596 5' -55.4 NC_005091.1 + 25809 0.66 0.716557
Target:  5'- gCCGGcUGCcuuGGCCGACAcggcgaacUUGCCguacGACGCg -3'
miRNA:   3'- -GGCCuACG---UCGGCUGU--------AGUGG----CUGUG- -5'
22596 5' -55.4 NC_005091.1 + 11946 0.66 0.716557
Target:  5'- -aGGAUGUcguAGCCGuCGUcCugCGugACg -3'
miRNA:   3'- ggCCUACG---UCGGCuGUA-GugGCugUG- -5'
22596 5' -55.4 NC_005091.1 + 28256 0.66 0.716557
Target:  5'- uCCGG-UGCAaCCGGCGacgCGCUGGCGg -3'
miRNA:   3'- -GGCCuACGUcGGCUGUa--GUGGCUGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.