miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22596 5' -55.4 NC_005091.1 + 10132 0.68 0.619277
Target:  5'- aCGGAcGUuacGCCGGCAcgCGCCGAgCGCc -3'
miRNA:   3'- gGCCUaCGu--CGGCUGUa-GUGGCU-GUG- -5'
22596 5' -55.4 NC_005091.1 + 25633 0.68 0.597528
Target:  5'- gCGGcggGCAGCCGA--UCGCCGAgcuggcCGCg -3'
miRNA:   3'- gGCCua-CGUCGGCUguAGUGGCU------GUG- -5'
22596 5' -55.4 NC_005091.1 + 39962 0.68 0.597528
Target:  5'- -aGGAcaUGCAGCCccuucgacGCGUCGCCGAUcuuGCg -3'
miRNA:   3'- ggCCU--ACGUCGGc-------UGUAGUGGCUG---UG- -5'
22596 5' -55.4 NC_005091.1 + 21635 0.68 0.597528
Target:  5'- aCCGGcggGCGGCCGuucguucgaACGUCGCCccauGCGCc -3'
miRNA:   3'- -GGCCua-CGUCGGC---------UGUAGUGGc---UGUG- -5'
22596 5' -55.4 NC_005091.1 + 31689 0.68 0.608392
Target:  5'- aCCGGGUGCGauaCCGuaGCcgCGCCGGC-Cg -3'
miRNA:   3'- -GGCCUACGUc--GGC--UGuaGUGGCUGuG- -5'
22596 5' -55.4 NC_005091.1 + 11427 0.68 0.619277
Target:  5'- uUCGcg-GCGGCC-ACGUCGgCCGACGCu -3'
miRNA:   3'- -GGCcuaCGUCGGcUGUAGU-GGCUGUG- -5'
22596 5' -55.4 NC_005091.1 + 25865 0.68 0.619277
Target:  5'- uCCGGAUGCcgaGGCguuCGGCuugCGCCuGCACg -3'
miRNA:   3'- -GGCCUACG---UCG---GCUGua-GUGGcUGUG- -5'
22596 5' -55.4 NC_005091.1 + 32658 0.68 0.619277
Target:  5'- -gGGAuUGCcGUCGACcuugugGUCGCCGGCAUg -3'
miRNA:   3'- ggCCU-ACGuCGGCUG------UAGUGGCUGUG- -5'
22596 5' -55.4 NC_005091.1 + 52181 0.68 0.619277
Target:  5'- gCCGGggGCGucCCGAUgacuuccaaAUgGCCGACACg -3'
miRNA:   3'- -GGCCuaCGUc-GGCUG---------UAgUGGCUGUG- -5'
22596 5' -55.4 NC_005091.1 + 19536 0.68 0.586692
Target:  5'- uCCGGuUGCugcgcuuucgGGCCGAgCGcCGCCGACAg -3'
miRNA:   3'- -GGCCuACG----------UCGGCU-GUaGUGGCUGUg -5'
22596 5' -55.4 NC_005091.1 + 31032 0.69 0.565141
Target:  5'- gCCGGAUcGCGGCCGAaGUcCACgCGuuGCa -3'
miRNA:   3'- -GGCCUA-CGUCGGCUgUA-GUG-GCugUG- -5'
22596 5' -55.4 NC_005091.1 + 29966 0.69 0.543802
Target:  5'- -----cGCGGUCGAgAUCACCGACGa -3'
miRNA:   3'- ggccuaCGUCGGCUgUAGUGGCUGUg -5'
22596 5' -55.4 NC_005091.1 + 13888 0.73 0.33892
Target:  5'- gCCGacGAUGCAGCCGucgucugguugaaccGCAgcuugUACCGGCGCg -3'
miRNA:   3'- -GGC--CUACGUCGGC---------------UGUa----GUGGCUGUG- -5'
22596 5' -55.4 NC_005091.1 + 23964 0.73 0.343808
Target:  5'- gCCGGGccaGUGGCUGAauCGUUGCCGACGCg -3'
miRNA:   3'- -GGCCUa--CGUCGGCU--GUAGUGGCUGUG- -5'
22596 5' -55.4 NC_005091.1 + 41959 0.72 0.369006
Target:  5'- uCCGGAUucgcgaggucgaGCAGC--ACGUCGCCGugGCa -3'
miRNA:   3'- -GGCCUA------------CGUCGgcUGUAGUGGCugUG- -5'
22596 5' -55.4 NC_005091.1 + 11467 0.72 0.386494
Target:  5'- uCCGGcUGUAGCCGAaugCGCCGAggauCGCu -3'
miRNA:   3'- -GGCCuACGUCGGCUguaGUGGCU----GUG- -5'
22596 5' -55.4 NC_005091.1 + 38877 0.72 0.413729
Target:  5'- -aGGucucgGCAGCCGGCGUCGCgGugAg -3'
miRNA:   3'- ggCCua---CGUCGGCUGUAGUGgCugUg -5'
22596 5' -55.4 NC_005091.1 + 52106 0.72 0.413729
Target:  5'- gCCGuGAaaagGCGGCCG---UCGCCGGCGCg -3'
miRNA:   3'- -GGC-CUa---CGUCGGCuguAGUGGCUGUG- -5'
22596 5' -55.4 NC_005091.1 + 26016 0.71 0.461638
Target:  5'- gCGcccUGCAcGCCGACGUaCGCCGugGCg -3'
miRNA:   3'- gGCcu-ACGU-CGGCUGUA-GUGGCugUG- -5'
22596 5' -55.4 NC_005091.1 + 32208 0.7 0.512316
Target:  5'- gCGGcgGCAGCgaGCAUCACCuuCGCg -3'
miRNA:   3'- gGCCuaCGUCGgcUGUAGUGGcuGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.