miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22612 5' -58 NC_005091.1 + 4225 0.66 0.616201
Target:  5'- cGGCUGUGGcagaggaugaagUGCGGc---GUGCCgGGCCa -3'
miRNA:   3'- -UCGGCACU------------ACGCCuagcUACGG-CCGG- -5'
22612 5' -58 NC_005091.1 + 47883 0.66 0.60548
Target:  5'- cGCCG-GGUGCGGuUUGuaGCCGGguCCa -3'
miRNA:   3'- uCGGCaCUACGCCuAGCuaCGGCC--GG- -5'
22612 5' -58 NC_005091.1 + 15157 0.66 0.60548
Target:  5'- uGCCGU--UGCgcccGGAUCGGggacgaGaCCGGCCg -3'
miRNA:   3'- uCGGCAcuACG----CCUAGCUa-----C-GGCCGG- -5'
22612 5' -58 NC_005091.1 + 13078 0.66 0.60548
Target:  5'- gAGCCGUGGcugGCGGcaggcaauaCGccGCuCGGCCc -3'
miRNA:   3'- -UCGGCACUa--CGCCua-------GCuaCG-GCCGG- -5'
22612 5' -58 NC_005091.1 + 50073 0.66 0.60548
Target:  5'- cGGCCuguGUGAUaGCcGAcgaaUCGAgcgcaacgcgUGCCGGCCu -3'
miRNA:   3'- -UCGG---CACUA-CGcCU----AGCU----------ACGGCCGG- -5'
22612 5' -58 NC_005091.1 + 52964 0.66 0.60548
Target:  5'- -aCCGUGGcugguUGUaccuGAUCGcgGCCGGCUg -3'
miRNA:   3'- ucGGCACU-----ACGc---CUAGCuaCGGCCGG- -5'
22612 5' -58 NC_005091.1 + 25094 0.66 0.60548
Target:  5'- cGGCCacgGAgGCGGucgccAUCGAcgcGCCGGCUg -3'
miRNA:   3'- -UCGGca-CUaCGCC-----UAGCUa--CGGCCGG- -5'
22612 5' -58 NC_005091.1 + 22864 0.66 0.594782
Target:  5'- cGuCCGUGcu-CGuGAUCGAUGCCGaGCg -3'
miRNA:   3'- uC-GGCACuacGC-CUAGCUACGGC-CGg -5'
22612 5' -58 NC_005091.1 + 25329 0.66 0.594782
Target:  5'- cGCCGUGG-GCGacguGAUCGGccucgUGCuCGGCg -3'
miRNA:   3'- uCGGCACUaCGC----CUAGCU-----ACG-GCCGg -5'
22612 5' -58 NC_005091.1 + 5314 0.66 0.594782
Target:  5'- cGGCCaGUGAUGU-GAUCcggGgCGGCCg -3'
miRNA:   3'- -UCGG-CACUACGcCUAGcuaCgGCCGG- -5'
22612 5' -58 NC_005091.1 + 28945 0.66 0.594782
Target:  5'- aGGCCGUGAU-CGGGUCGuUGC--GCUu -3'
miRNA:   3'- -UCGGCACUAcGCCUAGCuACGgcCGG- -5'
22612 5' -58 NC_005091.1 + 52135 0.66 0.591577
Target:  5'- gGGCgCGU--UGCGGA-CGAUGUaaucgaacgaccagCGGCCa -3'
miRNA:   3'- -UCG-GCAcuACGCCUaGCUACG--------------GCCGG- -5'
22612 5' -58 NC_005091.1 + 34860 0.66 0.573482
Target:  5'- -cCCGcUGAaGCGGAUCGccgacgcGCgCGGCCg -3'
miRNA:   3'- ucGGC-ACUaCGCCUAGCua-----CG-GCCGG- -5'
22612 5' -58 NC_005091.1 + 56290 0.66 0.562897
Target:  5'- cGaCCGgcagGCGGAugaucUCGAUGCCGGaCa -3'
miRNA:   3'- uC-GGCacuaCGCCU-----AGCUACGGCCgG- -5'
22612 5' -58 NC_005091.1 + 16094 0.66 0.562897
Target:  5'- cGGCCGU--UGCacccGGAUCGGggacgagGCCaGCCg -3'
miRNA:   3'- -UCGGCAcuACG----CCUAGCUa------CGGcCGG- -5'
22612 5' -58 NC_005091.1 + 27944 0.66 0.561841
Target:  5'- cGGCCGUacgcguugugcgaGAUgaaGCGGAacgcacccaugaUCuGAUcGCCGGCCg -3'
miRNA:   3'- -UCGGCA-------------CUA---CGCCU------------AG-CUA-CGGCCGG- -5'
22612 5' -58 NC_005091.1 + 56966 0.67 0.552365
Target:  5'- cGCgGUGAUGCucGAaugCGAcgcagagcggGCCGGCCg -3'
miRNA:   3'- uCGgCACUACGc-CUa--GCUa---------CGGCCGG- -5'
22612 5' -58 NC_005091.1 + 34313 0.67 0.549217
Target:  5'- cGCCGgGGUGCGcGAccUgaauccaguagcccUGcgGCCGGCCg -3'
miRNA:   3'- uCGGCaCUACGC-CU--A--------------GCuaCGGCCGG- -5'
22612 5' -58 NC_005091.1 + 24308 0.67 0.541894
Target:  5'- cGCCuUGAUcGCGG--CGAUagGCUGGCCg -3'
miRNA:   3'- uCGGcACUA-CGCCuaGCUA--CGGCCGG- -5'
22612 5' -58 NC_005091.1 + 32985 0.67 0.531489
Target:  5'- cGGCgGUGAagcaGCGGGuugcuUCGA-GuuGGCCg -3'
miRNA:   3'- -UCGgCACUa---CGCCU-----AGCUaCggCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.