miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22612 5' -58 NC_005091.1 + 962 0.67 0.500737
Target:  5'- cGCCGggaUGGUGUGGuUCGAUGCgGaugcgauugagcGCCg -3'
miRNA:   3'- uCGGC---ACUACGCCuAGCUACGgC------------CGG- -5'
22612 5' -58 NC_005091.1 + 3336 0.68 0.464916
Target:  5'- aAGCCGaucAUGCGcggguugaagucaucGAUCGAgcgGCCGGCg -3'
miRNA:   3'- -UCGGCac-UACGC---------------CUAGCUa--CGGCCGg -5'
22612 5' -58 NC_005091.1 + 4225 0.66 0.616201
Target:  5'- cGGCUGUGGcagaggaugaagUGCGGc---GUGCCgGGCCa -3'
miRNA:   3'- -UCGGCACU------------ACGCCuagcUACGG-CCGG- -5'
22612 5' -58 NC_005091.1 + 5314 0.66 0.594782
Target:  5'- cGGCCaGUGAUGU-GAUCcggGgCGGCCg -3'
miRNA:   3'- -UCGG-CACUACGcCUAGcuaCgGCCGG- -5'
22612 5' -58 NC_005091.1 + 6272 0.7 0.344852
Target:  5'- uGGUgGUGGUGCGGGUUG--GCCGGgUg -3'
miRNA:   3'- -UCGgCACUACGCCUAGCuaCGGCCgG- -5'
22612 5' -58 NC_005091.1 + 6598 0.7 0.353008
Target:  5'- aGGCCaGgcacGAUGUGGAUCGA-GUCGGgCg -3'
miRNA:   3'- -UCGG-Ca---CUACGCCUAGCUaCGGCCgG- -5'
22612 5' -58 NC_005091.1 + 7206 0.68 0.468831
Target:  5'- cGGCCGgcaGAUgGCGGcgCGuuaccuucgucuUGCCGGCa -3'
miRNA:   3'- -UCGGCa--CUA-CGCCuaGCu-----------ACGGCCGg -5'
22612 5' -58 NC_005091.1 + 7997 0.69 0.393137
Target:  5'- uGCCGUacgaacgugugcgcGA-GgGGAUCGAgGUCGGCCu -3'
miRNA:   3'- uCGGCA--------------CUaCgCCUAGCUaCGGCCGG- -5'
22612 5' -58 NC_005091.1 + 9365 0.69 0.412911
Target:  5'- cAGCCGgucgGCGGccagcggcgagcaGUCGAccauucGCCGGCCg -3'
miRNA:   3'- -UCGGCacuaCGCC-------------UAGCUa-----CGGCCGG- -5'
22612 5' -58 NC_005091.1 + 13078 0.66 0.60548
Target:  5'- gAGCCGUGGcugGCGGcaggcaauaCGccGCuCGGCCc -3'
miRNA:   3'- -UCGGCACUa--CGCCua-------GCuaCG-GCCGG- -5'
22612 5' -58 NC_005091.1 + 15157 0.66 0.60548
Target:  5'- uGCCGU--UGCgcccGGAUCGGggacgaGaCCGGCCg -3'
miRNA:   3'- uCGGCAcuACG----CCUAGCUa-----C-GGCCGG- -5'
22612 5' -58 NC_005091.1 + 16094 0.66 0.562897
Target:  5'- cGGCCGU--UGCacccGGAUCGGggacgagGCCaGCCg -3'
miRNA:   3'- -UCGGCAcuACG----CCUAGCUa------CGGcCGG- -5'
22612 5' -58 NC_005091.1 + 16329 0.67 0.510905
Target:  5'- cGUCGcGA-GCGGcgcAUCGcAUGCCGGCg -3'
miRNA:   3'- uCGGCaCUaCGCC---UAGC-UACGGCCGg -5'
22612 5' -58 NC_005091.1 + 17865 0.69 0.413824
Target:  5'- cGGCCGgGAccugUGCGaGAUCG--GCCGGCg -3'
miRNA:   3'- -UCGGCaCU----ACGC-CUAGCuaCGGCCGg -5'
22612 5' -58 NC_005091.1 + 18259 0.67 0.517046
Target:  5'- cGCCGuUGAaGCGGuucacgcucacgcUCGAUcGCCgGGCCg -3'
miRNA:   3'- uCGGC-ACUaCGCCu------------AGCUA-CGG-CCGG- -5'
22612 5' -58 NC_005091.1 + 18982 0.72 0.270819
Target:  5'- uGGCCGcGAUgcucgGCGGaAUCG-UGCCGGCg -3'
miRNA:   3'- -UCGGCaCUA-----CGCC-UAGCuACGGCCGg -5'
22612 5' -58 NC_005091.1 + 19809 0.68 0.470795
Target:  5'- uGCCGacGUGCGuuUCGAUGCCGuaCu -3'
miRNA:   3'- uCGGCacUACGCcuAGCUACGGCcgG- -5'
22612 5' -58 NC_005091.1 + 22864 0.66 0.594782
Target:  5'- cGuCCGUGcu-CGuGAUCGAUGCCGaGCg -3'
miRNA:   3'- uC-GGCACuacGC-CUAGCUACGGC-CGg -5'
22612 5' -58 NC_005091.1 + 23010 0.67 0.500737
Target:  5'- aGGuuGUGAUGaCGGuAUCGccUGCC-GCCg -3'
miRNA:   3'- -UCggCACUAC-GCC-UAGCu-ACGGcCGG- -5'
22612 5' -58 NC_005091.1 + 24308 0.67 0.541894
Target:  5'- cGCCuUGAUcGCGG--CGAUagGCUGGCCg -3'
miRNA:   3'- uCGGcACUA-CGCCuaGCUA--CGGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.