miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22612 5' -58 NC_005091.1 + 25094 0.66 0.60548
Target:  5'- cGGCCacgGAgGCGGucgccAUCGAcgcGCCGGCUg -3'
miRNA:   3'- -UCGGca-CUaCGCC-----UAGCUa--CGGCCGG- -5'
22612 5' -58 NC_005091.1 + 25210 0.67 0.521157
Target:  5'- cGGCCGc--UGCaccgGGGUCGAUgcaGCCGGCg -3'
miRNA:   3'- -UCGGCacuACG----CCUAGCUA---CGGCCGg -5'
22612 5' -58 NC_005091.1 + 25329 0.66 0.594782
Target:  5'- cGCCGUGG-GCGacguGAUCGGccucgUGCuCGGCg -3'
miRNA:   3'- uCGGCACUaCGC----CUAGCU-----ACG-GCCGg -5'
22612 5' -58 NC_005091.1 + 26102 0.71 0.32895
Target:  5'- cGUCGUGAUGCGG-UCGAgcaGCgaaaCGGUCu -3'
miRNA:   3'- uCGGCACUACGCCuAGCUa--CG----GCCGG- -5'
22612 5' -58 NC_005091.1 + 27944 0.66 0.561841
Target:  5'- cGGCCGUacgcguugugcgaGAUgaaGCGGAacgcacccaugaUCuGAUcGCCGGCCg -3'
miRNA:   3'- -UCGGCA-------------CUA---CGCCU------------AG-CUA-CGGCCGG- -5'
22612 5' -58 NC_005091.1 + 28093 0.69 0.411088
Target:  5'- aAGCUG-GcgGCGGAuaccuacgaucaggUCG-UGUCGGCCg -3'
miRNA:   3'- -UCGGCaCuaCGCCU--------------AGCuACGGCCGG- -5'
22612 5' -58 NC_005091.1 + 28945 0.66 0.594782
Target:  5'- aGGCCGUGAU-CGGGUCGuUGC--GCUu -3'
miRNA:   3'- -UCGGCACUAcGCCUAGCuACGgcCGG- -5'
22612 5' -58 NC_005091.1 + 32985 0.67 0.531489
Target:  5'- cGGCgGUGAagcaGCGGGuugcuUCGA-GuuGGCCg -3'
miRNA:   3'- -UCGgCACUa---CGCCU-----AGCUaCggCCGG- -5'
22612 5' -58 NC_005091.1 + 33590 1.11 0.000431
Target:  5'- cAGCCGUGAUGCGGAUCGAUGCCGGCCu -3'
miRNA:   3'- -UCGGCACUACGCCUAGCUACGGCCGG- -5'
22612 5' -58 NC_005091.1 + 34313 0.67 0.549217
Target:  5'- cGCCGgGGUGCGcGAccUgaauccaguagcccUGcgGCCGGCCg -3'
miRNA:   3'- uCGGCaCUACGC-CU--A--------------GCuaCGGCCGG- -5'
22612 5' -58 NC_005091.1 + 34860 0.66 0.573482
Target:  5'- -cCCGcUGAaGCGGAUCGccgacgcGCgCGGCCg -3'
miRNA:   3'- ucGGC-ACUaCGCCUAGCua-----CG-GCCGG- -5'
22612 5' -58 NC_005091.1 + 44140 0.68 0.49066
Target:  5'- uGCCGagcaGAUGauCGGggCGuAUGCCGGUCu -3'
miRNA:   3'- uCGGCa---CUAC--GCCuaGC-UACGGCCGG- -5'
22612 5' -58 NC_005091.1 + 45925 0.68 0.451348
Target:  5'- uGCCgGUGuUGCGccgcGUCGAUGCgcaGGCCa -3'
miRNA:   3'- uCGG-CACuACGCc---UAGCUACGg--CCGG- -5'
22612 5' -58 NC_005091.1 + 45933 0.71 0.321973
Target:  5'- cGGCCGcuucguguccggaugGAUGUGGAacgCGAcgaacUGCUGGCCg -3'
miRNA:   3'- -UCGGCa--------------CUACGCCUa--GCU-----ACGGCCGG- -5'
22612 5' -58 NC_005091.1 + 47883 0.66 0.60548
Target:  5'- cGCCG-GGUGCGGuUUGuaGCCGGguCCa -3'
miRNA:   3'- uCGGCaCUACGCCuAGCuaCGGCC--GG- -5'
22612 5' -58 NC_005091.1 + 48684 0.7 0.369725
Target:  5'- uGCCGUcAUGCGuGcgCacgGCCGGCCa -3'
miRNA:   3'- uCGGCAcUACGC-CuaGcuaCGGCCGG- -5'
22612 5' -58 NC_005091.1 + 50073 0.66 0.60548
Target:  5'- cGGCCuguGUGAUaGCcGAcgaaUCGAgcgcaacgcgUGCCGGCCu -3'
miRNA:   3'- -UCGG---CACUA-CGcCU----AGCU----------ACGGCCGG- -5'
22612 5' -58 NC_005091.1 + 51484 0.7 0.378284
Target:  5'- uGCCGc---GCGGAUCGcAUGCacgGGCCa -3'
miRNA:   3'- uCGGCacuaCGCCUAGC-UACGg--CCGG- -5'
22612 5' -58 NC_005091.1 + 51863 0.71 0.313597
Target:  5'- cGCCGggaaGAUcGCGGAUgCGAUGCUGcGCg -3'
miRNA:   3'- uCGGCa---CUA-CGCCUA-GCUACGGC-CGg -5'
22612 5' -58 NC_005091.1 + 52105 0.67 0.521157
Target:  5'- uGCCGUGAaaagGCGGc-CGucGCCGGCg -3'
miRNA:   3'- uCGGCACUa---CGCCuaGCuaCGGCCGg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.