Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22612 | 5' | -58 | NC_005091.1 | + | 25094 | 0.66 | 0.60548 |
Target: 5'- cGGCCacgGAgGCGGucgccAUCGAcgcGCCGGCUg -3' miRNA: 3'- -UCGGca-CUaCGCC-----UAGCUa--CGGCCGG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 25210 | 0.67 | 0.521157 |
Target: 5'- cGGCCGc--UGCaccgGGGUCGAUgcaGCCGGCg -3' miRNA: 3'- -UCGGCacuACG----CCUAGCUA---CGGCCGg -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 25329 | 0.66 | 0.594782 |
Target: 5'- cGCCGUGG-GCGacguGAUCGGccucgUGCuCGGCg -3' miRNA: 3'- uCGGCACUaCGC----CUAGCU-----ACG-GCCGg -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 26102 | 0.71 | 0.32895 |
Target: 5'- cGUCGUGAUGCGG-UCGAgcaGCgaaaCGGUCu -3' miRNA: 3'- uCGGCACUACGCCuAGCUa--CG----GCCGG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 27944 | 0.66 | 0.561841 |
Target: 5'- cGGCCGUacgcguugugcgaGAUgaaGCGGAacgcacccaugaUCuGAUcGCCGGCCg -3' miRNA: 3'- -UCGGCA-------------CUA---CGCCU------------AG-CUA-CGGCCGG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 28093 | 0.69 | 0.411088 |
Target: 5'- aAGCUG-GcgGCGGAuaccuacgaucaggUCG-UGUCGGCCg -3' miRNA: 3'- -UCGGCaCuaCGCCU--------------AGCuACGGCCGG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 28945 | 0.66 | 0.594782 |
Target: 5'- aGGCCGUGAU-CGGGUCGuUGC--GCUu -3' miRNA: 3'- -UCGGCACUAcGCCUAGCuACGgcCGG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 32985 | 0.67 | 0.531489 |
Target: 5'- cGGCgGUGAagcaGCGGGuugcuUCGA-GuuGGCCg -3' miRNA: 3'- -UCGgCACUa---CGCCU-----AGCUaCggCCGG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 33590 | 1.11 | 0.000431 |
Target: 5'- cAGCCGUGAUGCGGAUCGAUGCCGGCCu -3' miRNA: 3'- -UCGGCACUACGCCUAGCUACGGCCGG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 34313 | 0.67 | 0.549217 |
Target: 5'- cGCCGgGGUGCGcGAccUgaauccaguagcccUGcgGCCGGCCg -3' miRNA: 3'- uCGGCaCUACGC-CU--A--------------GCuaCGGCCGG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 34860 | 0.66 | 0.573482 |
Target: 5'- -cCCGcUGAaGCGGAUCGccgacgcGCgCGGCCg -3' miRNA: 3'- ucGGC-ACUaCGCCUAGCua-----CG-GCCGG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 44140 | 0.68 | 0.49066 |
Target: 5'- uGCCGagcaGAUGauCGGggCGuAUGCCGGUCu -3' miRNA: 3'- uCGGCa---CUAC--GCCuaGC-UACGGCCGG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 45925 | 0.68 | 0.451348 |
Target: 5'- uGCCgGUGuUGCGccgcGUCGAUGCgcaGGCCa -3' miRNA: 3'- uCGG-CACuACGCc---UAGCUACGg--CCGG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 45933 | 0.71 | 0.321973 |
Target: 5'- cGGCCGcuucguguccggaugGAUGUGGAacgCGAcgaacUGCUGGCCg -3' miRNA: 3'- -UCGGCa--------------CUACGCCUa--GCU-----ACGGCCGG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 47883 | 0.66 | 0.60548 |
Target: 5'- cGCCG-GGUGCGGuUUGuaGCCGGguCCa -3' miRNA: 3'- uCGGCaCUACGCCuAGCuaCGGCC--GG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 48684 | 0.7 | 0.369725 |
Target: 5'- uGCCGUcAUGCGuGcgCacgGCCGGCCa -3' miRNA: 3'- uCGGCAcUACGC-CuaGcuaCGGCCGG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 50073 | 0.66 | 0.60548 |
Target: 5'- cGGCCuguGUGAUaGCcGAcgaaUCGAgcgcaacgcgUGCCGGCCu -3' miRNA: 3'- -UCGG---CACUA-CGcCU----AGCU----------ACGGCCGG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 51484 | 0.7 | 0.378284 |
Target: 5'- uGCCGc---GCGGAUCGcAUGCacgGGCCa -3' miRNA: 3'- uCGGCacuaCGCCUAGC-UACGg--CCGG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 51863 | 0.71 | 0.313597 |
Target: 5'- cGCCGggaaGAUcGCGGAUgCGAUGCUGcGCg -3' miRNA: 3'- uCGGCa---CUA-CGCCUA-GCUACGGC-CGg -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 52105 | 0.67 | 0.521157 |
Target: 5'- uGCCGUGAaaagGCGGc-CGucGCCGGCg -3' miRNA: 3'- uCGGCACUa---CGCCuaGCuaCGGCCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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