Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
22612 | 5' | -58 | NC_005091.1 | + | 54099 | 0.67 | 0.521157 |
Target: 5'- cGCCGUcgcGCuGGAaaagCGAgacGCCGGCCg -3' miRNA: 3'- uCGGCAcuaCG-CCUa---GCUa--CGGCCGG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 18259 | 0.67 | 0.517046 |
Target: 5'- cGCCGuUGAaGCGGuucacgcucacgcUCGAUcGCCgGGCCg -3' miRNA: 3'- uCGGC-ACUaCGCCu------------AGCUA-CGG-CCGG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 16329 | 0.67 | 0.510905 |
Target: 5'- cGUCGcGA-GCGGcgcAUCGcAUGCCGGCg -3' miRNA: 3'- uCGGCaCUaCGCC---UAGC-UACGGCCGg -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 34313 | 0.67 | 0.549217 |
Target: 5'- cGCCGgGGUGCGcGAccUgaauccaguagcccUGcgGCCGGCCg -3' miRNA: 3'- uCGGCaCUACGC-CU--A--------------GCuaCGGCCGG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 24308 | 0.67 | 0.541894 |
Target: 5'- cGCCuUGAUcGCGG--CGAUagGCUGGCCg -3' miRNA: 3'- uCGGcACUA-CGCCuaGCUA--CGGCCGG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 52105 | 0.67 | 0.521157 |
Target: 5'- uGCCGUGAaaagGCGGc-CGucGCCGGCg -3' miRNA: 3'- uCGGCACUa---CGCCuaGCuaCGGCCGg -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 23010 | 0.67 | 0.500737 |
Target: 5'- aGGuuGUGAUGaCGGuAUCGccUGCC-GCCg -3' miRNA: 3'- -UCggCACUAC-GCC-UAGCu-ACGGcCGG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 44140 | 0.68 | 0.49066 |
Target: 5'- uGCCGagcaGAUGauCGGggCGuAUGCCGGUCu -3' miRNA: 3'- uCGGCa---CUAC--GCCuaGC-UACGGCCGG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 52279 | 0.68 | 0.480678 |
Target: 5'- aAGCCccuuaGUGugcguUGCGGAUCGAUucGacagCGGCCa -3' miRNA: 3'- -UCGG-----CACu----ACGCCUAGCUA--Cg---GCCGG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 19809 | 0.68 | 0.470795 |
Target: 5'- uGCCGacGUGCGuuUCGAUGCCGuaCu -3' miRNA: 3'- uCGGCacUACGCcuAGCUACGGCcgG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 45925 | 0.68 | 0.451348 |
Target: 5'- uGCCgGUGuUGCGccgcGUCGAUGCgcaGGCCa -3' miRNA: 3'- uCGG-CACuACGCc---UAGCUACGg--CCGG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 7206 | 0.68 | 0.468831 |
Target: 5'- cGGCCGgcaGAUgGCGGcgCGuuaccuucgucuUGCCGGCa -3' miRNA: 3'- -UCGGCa--CUA-CGCCuaGCu-----------ACGGCCGg -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 3336 | 0.68 | 0.464916 |
Target: 5'- aAGCCGaucAUGCGcggguugaagucaucGAUCGAgcgGCCGGCg -3' miRNA: 3'- -UCGGCac-UACGC---------------CUAGCUa--CGGCCGg -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 57333 | 0.69 | 0.414739 |
Target: 5'- cGCCGgguUGCGGGaugaUCGGcuuguccgguuggugGCCGGCCa -3' miRNA: 3'- uCGGCacuACGCCU----AGCUa--------------CGGCCGG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 9365 | 0.69 | 0.412911 |
Target: 5'- cAGCCGgucgGCGGccagcggcgagcaGUCGAccauucGCCGGCCg -3' miRNA: 3'- -UCGGCacuaCGCC-------------UAGCUa-----CGGCCGG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 28093 | 0.69 | 0.411088 |
Target: 5'- aAGCUG-GcgGCGGAuaccuacgaucaggUCG-UGUCGGCCg -3' miRNA: 3'- -UCGGCaCuaCGCCU--------------AGCuACGGCCGG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 17865 | 0.69 | 0.413824 |
Target: 5'- cGGCCGgGAccugUGCGaGAUCG--GCCGGCg -3' miRNA: 3'- -UCGGCaCU----ACGC-CUAGCuaCGGCCGg -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 7997 | 0.69 | 0.393137 |
Target: 5'- uGCCGUacgaacgugugcgcGA-GgGGAUCGAgGUCGGCCu -3' miRNA: 3'- uCGGCA--------------CUaCgCCUAGCUaCGGCCGG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 6598 | 0.7 | 0.353008 |
Target: 5'- aGGCCaGgcacGAUGUGGAUCGA-GUCGGgCg -3' miRNA: 3'- -UCGG-Ca---CUACGCCUAGCUaCGGCCgG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 6272 | 0.7 | 0.344852 |
Target: 5'- uGGUgGUGGUGCGGGUUG--GCCGGgUg -3' miRNA: 3'- -UCGgCACUACGCCUAGCuaCGGCCgG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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