Results 41 - 48 of 48 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
|
P value |
| Predicted miRNA align pattern | |||||||
| 22612 | 5' | -58 | NC_005091.1 | + | 48684 | 0.7 | 0.369725 |
|
Target: 5'- uGCCGUcAUGCGuGcgCacgGCCGGCCa -3' miRNA: 3'- uCGGCAcUACGC-CuaGcuaCGGCCGG- -5' |
|||||||
| 22612 | 5' | -58 | NC_005091.1 | + | 56689 | 0.7 | 0.386975 |
|
Target: 5'- ---gGUGAUGUGGcAUCGGaggccgUGCCGGUCa -3' miRNA: 3'- ucggCACUACGCC-UAGCU------ACGGCCGG- -5' |
|||||||
| 22612 | 5' | -58 | NC_005091.1 | + | 51484 | 0.7 | 0.378284 |
|
Target: 5'- uGCCGc---GCGGAUCGcAUGCacgGGCCa -3' miRNA: 3'- uCGGCacuaCGCCUAGC-UACGg--CCGG- -5' |
|||||||
| 22612 | 5' | -58 | NC_005091.1 | + | 26102 | 0.71 | 0.32895 |
|
Target: 5'- cGUCGUGAUGCGG-UCGAgcaGCgaaaCGGUCu -3' miRNA: 3'- uCGGCACUACGCCuAGCUa--CG----GCCGG- -5' |
|||||||
| 22612 | 5' | -58 | NC_005091.1 | + | 45933 | 0.71 | 0.321973 |
|
Target: 5'- cGGCCGcuucguguccggaugGAUGUGGAacgCGAcgaacUGCUGGCCg -3' miRNA: 3'- -UCGGCa--------------CUACGCCUa--GCU-----ACGGCCGG- -5' |
|||||||
| 22612 | 5' | -58 | NC_005091.1 | + | 51863 | 0.71 | 0.313597 |
|
Target: 5'- cGCCGggaaGAUcGCGGAUgCGAUGCUGcGCg -3' miRNA: 3'- uCGGCa---CUA-CGCCUA-GCUACGGC-CGg -5' |
|||||||
| 22612 | 5' | -58 | NC_005091.1 | + | 18982 | 0.72 | 0.270819 |
|
Target: 5'- uGGCCGcGAUgcucgGCGGaAUCG-UGCCGGCg -3' miRNA: 3'- -UCGGCaCUA-----CGCC-UAGCuACGGCCGg -5' |
|||||||
| 22612 | 5' | -58 | NC_005091.1 | + | 33590 | 1.11 | 0.000431 |
|
Target: 5'- cAGCCGUGAUGCGGAUCGAUGCCGGCCu -3' miRNA: 3'- -UCGGCACUACGCCUAGCUACGGCCGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home