Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22612 | 5' | -58 | NC_005091.1 | + | 16329 | 0.67 | 0.510905 |
Target: 5'- cGUCGcGA-GCGGcgcAUCGcAUGCCGGCg -3' miRNA: 3'- uCGGCaCUaCGCC---UAGC-UACGGCCGg -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 962 | 0.67 | 0.500737 |
Target: 5'- cGCCGggaUGGUGUGGuUCGAUGCgGaugcgauugagcGCCg -3' miRNA: 3'- uCGGC---ACUACGCCuAGCUACGgC------------CGG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 7206 | 0.68 | 0.468831 |
Target: 5'- cGGCCGgcaGAUgGCGGcgCGuuaccuucgucuUGCCGGCa -3' miRNA: 3'- -UCGGCa--CUA-CGCCuaGCu-----------ACGGCCGg -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 3336 | 0.68 | 0.464916 |
Target: 5'- aAGCCGaucAUGCGcggguugaagucaucGAUCGAgcgGCCGGCg -3' miRNA: 3'- -UCGGCac-UACGC---------------CUAGCUa--CGGCCGg -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 57333 | 0.69 | 0.414739 |
Target: 5'- cGCCGgguUGCGGGaugaUCGGcuuguccgguuggugGCCGGCCa -3' miRNA: 3'- uCGGCacuACGCCU----AGCUa--------------CGGCCGG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 9365 | 0.69 | 0.412911 |
Target: 5'- cAGCCGgucgGCGGccagcggcgagcaGUCGAccauucGCCGGCCg -3' miRNA: 3'- -UCGGCacuaCGCC-------------UAGCUa-----CGGCCGG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 28093 | 0.69 | 0.411088 |
Target: 5'- aAGCUG-GcgGCGGAuaccuacgaucaggUCG-UGUCGGCCg -3' miRNA: 3'- -UCGGCaCuaCGCCU--------------AGCuACGGCCGG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 56689 | 0.7 | 0.386975 |
Target: 5'- ---gGUGAUGUGGcAUCGGaggccgUGCCGGUCa -3' miRNA: 3'- ucggCACUACGCC-UAGCU------ACGGCCGG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 6598 | 0.7 | 0.353008 |
Target: 5'- aGGCCaGgcacGAUGUGGAUCGA-GUCGGgCg -3' miRNA: 3'- -UCGG-Ca---CUACGCCUAGCUaCGGCCgG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 6272 | 0.7 | 0.344852 |
Target: 5'- uGGUgGUGGUGCGGGUUG--GCCGGgUg -3' miRNA: 3'- -UCGgCACUACGCCUAGCuaCGGCCgG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 45933 | 0.71 | 0.321973 |
Target: 5'- cGGCCGcuucguguccggaugGAUGUGGAacgCGAcgaacUGCUGGCCg -3' miRNA: 3'- -UCGGCa--------------CUACGCCUa--GCU-----ACGGCCGG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 51863 | 0.71 | 0.313597 |
Target: 5'- cGCCGggaaGAUcGCGGAUgCGAUGCUGcGCg -3' miRNA: 3'- uCGGCa---CUA-CGCCUA-GCUACGGC-CGg -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 18982 | 0.72 | 0.270819 |
Target: 5'- uGGCCGcGAUgcucgGCGGaAUCG-UGCCGGCg -3' miRNA: 3'- -UCGGCaCUA-----CGCC-UAGCuACGGCCGg -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 33590 | 1.11 | 0.000431 |
Target: 5'- cAGCCGUGAUGCGGAUCGAUGCCGGCCu -3' miRNA: 3'- -UCGGCACUACGCCUAGCUACGGCCGG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 18259 | 0.67 | 0.517046 |
Target: 5'- cGCCGuUGAaGCGGuucacgcucacgcUCGAUcGCCgGGCCg -3' miRNA: 3'- uCGGC-ACUaCGCCu------------AGCUA-CGG-CCGG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 54099 | 0.67 | 0.521157 |
Target: 5'- cGCCGUcgcGCuGGAaaagCGAgacGCCGGCCg -3' miRNA: 3'- uCGGCAcuaCG-CCUa---GCUa--CGGCCGG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 25210 | 0.67 | 0.521157 |
Target: 5'- cGGCCGc--UGCaccgGGGUCGAUgcaGCCGGCg -3' miRNA: 3'- -UCGGCacuACG----CCUAGCUA---CGGCCGg -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 32985 | 0.67 | 0.531489 |
Target: 5'- cGGCgGUGAagcaGCGGGuugcuUCGA-GuuGGCCg -3' miRNA: 3'- -UCGgCACUa---CGCCU-----AGCUaCggCCGG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 56966 | 0.67 | 0.552365 |
Target: 5'- cGCgGUGAUGCucGAaugCGAcgcagagcggGCCGGCCg -3' miRNA: 3'- uCGgCACUACGc-CUa--GCUa---------CGGCCGG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 56290 | 0.66 | 0.562897 |
Target: 5'- cGaCCGgcagGCGGAugaucUCGAUGCCGGaCa -3' miRNA: 3'- uC-GGCacuaCGCCU-----AGCUACGGCCgG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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