Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22612 | 5' | -58 | NC_005091.1 | + | 44140 | 0.68 | 0.49066 |
Target: 5'- uGCCGagcaGAUGauCGGggCGuAUGCCGGUCu -3' miRNA: 3'- uCGGCa---CUAC--GCCuaGC-UACGGCCGG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 23010 | 0.67 | 0.500737 |
Target: 5'- aGGuuGUGAUGaCGGuAUCGccUGCC-GCCg -3' miRNA: 3'- -UCggCACUAC-GCC-UAGCu-ACGGcCGG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 962 | 0.67 | 0.500737 |
Target: 5'- cGCCGggaUGGUGUGGuUCGAUGCgGaugcgauugagcGCCg -3' miRNA: 3'- uCGGC---ACUACGCCuAGCUACGgC------------CGG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 16329 | 0.67 | 0.510905 |
Target: 5'- cGUCGcGA-GCGGcgcAUCGcAUGCCGGCg -3' miRNA: 3'- uCGGCaCUaCGCC---UAGC-UACGGCCGg -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 18259 | 0.67 | 0.517046 |
Target: 5'- cGCCGuUGAaGCGGuucacgcucacgcUCGAUcGCCgGGCCg -3' miRNA: 3'- uCGGC-ACUaCGCCu------------AGCUA-CGG-CCGG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 52105 | 0.67 | 0.521157 |
Target: 5'- uGCCGUGAaaagGCGGc-CGucGCCGGCg -3' miRNA: 3'- uCGGCACUa---CGCCuaGCuaCGGCCGg -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 25210 | 0.67 | 0.521157 |
Target: 5'- cGGCCGc--UGCaccgGGGUCGAUgcaGCCGGCg -3' miRNA: 3'- -UCGGCacuACG----CCUAGCUA---CGGCCGg -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 54099 | 0.67 | 0.521157 |
Target: 5'- cGCCGUcgcGCuGGAaaagCGAgacGCCGGCCg -3' miRNA: 3'- uCGGCAcuaCG-CCUa---GCUa--CGGCCGG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 32985 | 0.67 | 0.531489 |
Target: 5'- cGGCgGUGAagcaGCGGGuugcuUCGA-GuuGGCCg -3' miRNA: 3'- -UCGgCACUa---CGCCU-----AGCUaCggCCGG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 24308 | 0.67 | 0.541894 |
Target: 5'- cGCCuUGAUcGCGG--CGAUagGCUGGCCg -3' miRNA: 3'- uCGGcACUA-CGCCuaGCUA--CGGCCGG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 34313 | 0.67 | 0.549217 |
Target: 5'- cGCCGgGGUGCGcGAccUgaauccaguagcccUGcgGCCGGCCg -3' miRNA: 3'- uCGGCaCUACGC-CU--A--------------GCuaCGGCCGG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 56966 | 0.67 | 0.552365 |
Target: 5'- cGCgGUGAUGCucGAaugCGAcgcagagcggGCCGGCCg -3' miRNA: 3'- uCGgCACUACGc-CUa--GCUa---------CGGCCGG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 27944 | 0.66 | 0.561841 |
Target: 5'- cGGCCGUacgcguugugcgaGAUgaaGCGGAacgcacccaugaUCuGAUcGCCGGCCg -3' miRNA: 3'- -UCGGCA-------------CUA---CGCCU------------AG-CUA-CGGCCGG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 56290 | 0.66 | 0.562897 |
Target: 5'- cGaCCGgcagGCGGAugaucUCGAUGCCGGaCa -3' miRNA: 3'- uC-GGCacuaCGCCU-----AGCUACGGCCgG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 16094 | 0.66 | 0.562897 |
Target: 5'- cGGCCGU--UGCacccGGAUCGGggacgagGCCaGCCg -3' miRNA: 3'- -UCGGCAcuACG----CCUAGCUa------CGGcCGG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 34860 | 0.66 | 0.573482 |
Target: 5'- -cCCGcUGAaGCGGAUCGccgacgcGCgCGGCCg -3' miRNA: 3'- ucGGC-ACUaCGCCUAGCua-----CG-GCCGG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 52135 | 0.66 | 0.591577 |
Target: 5'- gGGCgCGU--UGCGGA-CGAUGUaaucgaacgaccagCGGCCa -3' miRNA: 3'- -UCG-GCAcuACGCCUaGCUACG--------------GCCGG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 5314 | 0.66 | 0.594782 |
Target: 5'- cGGCCaGUGAUGU-GAUCcggGgCGGCCg -3' miRNA: 3'- -UCGG-CACUACGcCUAGcuaCgGCCGG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 28945 | 0.66 | 0.594782 |
Target: 5'- aGGCCGUGAU-CGGGUCGuUGC--GCUu -3' miRNA: 3'- -UCGGCACUAcGCCUAGCuACGgcCGG- -5' |
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22612 | 5' | -58 | NC_005091.1 | + | 25329 | 0.66 | 0.594782 |
Target: 5'- cGCCGUGG-GCGacguGAUCGGccucgUGCuCGGCg -3' miRNA: 3'- uCGGCACUaCGC----CUAGCU-----ACG-GCCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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