miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22612 5' -58 NC_005091.1 + 33590 1.11 0.000431
Target:  5'- cAGCCGUGAUGCGGAUCGAUGCCGGCCu -3'
miRNA:   3'- -UCGGCACUACGCCUAGCUACGGCCGG- -5'
22612 5' -58 NC_005091.1 + 18982 0.72 0.270819
Target:  5'- uGGCCGcGAUgcucgGCGGaAUCG-UGCCGGCg -3'
miRNA:   3'- -UCGGCaCUA-----CGCC-UAGCuACGGCCGg -5'
22612 5' -58 NC_005091.1 + 51863 0.71 0.313597
Target:  5'- cGCCGggaaGAUcGCGGAUgCGAUGCUGcGCg -3'
miRNA:   3'- uCGGCa---CUA-CGCCUA-GCUACGGC-CGg -5'
22612 5' -58 NC_005091.1 + 45933 0.71 0.321973
Target:  5'- cGGCCGcuucguguccggaugGAUGUGGAacgCGAcgaacUGCUGGCCg -3'
miRNA:   3'- -UCGGCa--------------CUACGCCUa--GCU-----ACGGCCGG- -5'
22612 5' -58 NC_005091.1 + 26102 0.71 0.32895
Target:  5'- cGUCGUGAUGCGG-UCGAgcaGCgaaaCGGUCu -3'
miRNA:   3'- uCGGCACUACGCCuAGCUa--CG----GCCGG- -5'
22612 5' -58 NC_005091.1 + 6272 0.7 0.344852
Target:  5'- uGGUgGUGGUGCGGGUUG--GCCGGgUg -3'
miRNA:   3'- -UCGgCACUACGCCUAGCuaCGGCCgG- -5'
22612 5' -58 NC_005091.1 + 6598 0.7 0.353008
Target:  5'- aGGCCaGgcacGAUGUGGAUCGA-GUCGGgCg -3'
miRNA:   3'- -UCGG-Ca---CUACGCCUAGCUaCGGCCgG- -5'
22612 5' -58 NC_005091.1 + 48684 0.7 0.369725
Target:  5'- uGCCGUcAUGCGuGcgCacgGCCGGCCa -3'
miRNA:   3'- uCGGCAcUACGC-CuaGcuaCGGCCGG- -5'
22612 5' -58 NC_005091.1 + 51484 0.7 0.378284
Target:  5'- uGCCGc---GCGGAUCGcAUGCacgGGCCa -3'
miRNA:   3'- uCGGCacuaCGCCUAGC-UACGg--CCGG- -5'
22612 5' -58 NC_005091.1 + 56689 0.7 0.386975
Target:  5'- ---gGUGAUGUGGcAUCGGaggccgUGCCGGUCa -3'
miRNA:   3'- ucggCACUACGCC-UAGCU------ACGGCCGG- -5'
22612 5' -58 NC_005091.1 + 7997 0.69 0.393137
Target:  5'- uGCCGUacgaacgugugcgcGA-GgGGAUCGAgGUCGGCCu -3'
miRNA:   3'- uCGGCA--------------CUaCgCCUAGCUaCGGCCGG- -5'
22612 5' -58 NC_005091.1 + 28093 0.69 0.411088
Target:  5'- aAGCUG-GcgGCGGAuaccuacgaucaggUCG-UGUCGGCCg -3'
miRNA:   3'- -UCGGCaCuaCGCCU--------------AGCuACGGCCGG- -5'
22612 5' -58 NC_005091.1 + 9365 0.69 0.412911
Target:  5'- cAGCCGgucgGCGGccagcggcgagcaGUCGAccauucGCCGGCCg -3'
miRNA:   3'- -UCGGCacuaCGCC-------------UAGCUa-----CGGCCGG- -5'
22612 5' -58 NC_005091.1 + 17865 0.69 0.413824
Target:  5'- cGGCCGgGAccugUGCGaGAUCG--GCCGGCg -3'
miRNA:   3'- -UCGGCaCU----ACGC-CUAGCuaCGGCCGg -5'
22612 5' -58 NC_005091.1 + 57333 0.69 0.414739
Target:  5'- cGCCGgguUGCGGGaugaUCGGcuuguccgguuggugGCCGGCCa -3'
miRNA:   3'- uCGGCacuACGCCU----AGCUa--------------CGGCCGG- -5'
22612 5' -58 NC_005091.1 + 45925 0.68 0.451348
Target:  5'- uGCCgGUGuUGCGccgcGUCGAUGCgcaGGCCa -3'
miRNA:   3'- uCGG-CACuACGCc---UAGCUACGg--CCGG- -5'
22612 5' -58 NC_005091.1 + 3336 0.68 0.464916
Target:  5'- aAGCCGaucAUGCGcggguugaagucaucGAUCGAgcgGCCGGCg -3'
miRNA:   3'- -UCGGCac-UACGC---------------CUAGCUa--CGGCCGg -5'
22612 5' -58 NC_005091.1 + 7206 0.68 0.468831
Target:  5'- cGGCCGgcaGAUgGCGGcgCGuuaccuucgucuUGCCGGCa -3'
miRNA:   3'- -UCGGCa--CUA-CGCCuaGCu-----------ACGGCCGg -5'
22612 5' -58 NC_005091.1 + 19809 0.68 0.470795
Target:  5'- uGCCGacGUGCGuuUCGAUGCCGuaCu -3'
miRNA:   3'- uCGGCacUACGCcuAGCUACGGCcgG- -5'
22612 5' -58 NC_005091.1 + 52279 0.68 0.480678
Target:  5'- aAGCCccuuaGUGugcguUGCGGAUCGAUucGacagCGGCCa -3'
miRNA:   3'- -UCGG-----CACu----ACGCCUAGCUA--Cg---GCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.